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FASTA Sequence PDB Format mmCIF Format
FASTA Sequence PDB Format PDB Format(gz) PDBx/mmCIF Format PDBx/mmCIF Format(gz) PDBML/XML Format Validation Full PDF Validation CIF

8Y82

Cryo-em structure of the tetrameric sparsa grna-ssdna-nad+ complex

PDB DOI: 10.2210/pdb8y82/pdb

Classification: STRUCTURAL PROTEIN/RNA/DNA
Organism(s): Geobacter Sulfurreducens , Synthetic Construct

Deposited: 2024-02-05
Deposition Author(s): Cui, N. , Jia, N. , Wei, X.Y. , Zhang, J.T.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.4 Å

8y82
Literature

Cryo-em structure of the tetrameric sparsa grna-ssdna-nad+ complex

Cui, N. , Jia, N. , Wei, X.Y. , Zhang, J.T.

Primary Citation of Related Structures: 8Y82


Proteins
Molecule Chains Sequence Length Organism Sequence
Sir2 superfamily protein A 587 Geobacter Sulfurreducens , Synthetic Construct MDVLTDNEFYQHYLQNSQHMMWFLGAGTSRSAGLPTASDIIWDLKHRYYCLHENQDYQKHDINNHAIKSKIQSYMDSKGFPLQWSPEEYSFYFELVFRDDYEAQRKYLLEALASRKVSLNIGHRVLAALLEMNQTKVVFTTNFDDVIETAFSDISGKHLSVYHLEGSYAALSALNTEAFPIYAKIHGDFRYQKIKNLTPDLQTNDREIHKCFLAAAIRFGLVVSGYSGRDENVMTMLRAAIDQNNAFPHGLYWTVPSISKSEPAVQDLITYAQGKGVRAYLVETGTFDEMLSKIWRQVKDKPAAIDAKVRTARVCPVSIPLPGPGKSFPALRTNALPVVTQSIRCGVVTLASPITFSELKERISQKSPKALLTYTEKVLFLGGEPEIRKIFSNDEINSIGQYYIDEIAQSVAASTFLKSFVEEAILTALLREKPILHRVRHRTHYAVIPNASAKDDRFLDLRKAVGFKGDLGYITGNVTNAKELSWAEAVSIRLEERGGKLWIMLKPEIWIKPLDRREEATDFIRSRRRYRFNQCSYQILDAWIKILFGSIGGGGTVNISCFPDAEFKAEFEIGTRTAFSLGVGYGR
Sir2 superfamily protein E 587 Geobacter Sulfurreducens , Synthetic Construct MDVLTDNEFYQHYLQNSQHMMWFLGAGTSRSAGLPTASDIIWDLKHRYYCLHENQDYQKHDINNHAIKSKIQSYMDSKGFPLQWSPEEYSFYFELVFRDDYEAQRKYLLEALASRKVSLNIGHRVLAALLEMNQTKVVFTTNFDDVIETAFSDISGKHLSVYHLEGSYAALSALNTEAFPIYAKIHGDFRYQKIKNLTPDLQTNDREIHKCFLAAAIRFGLVVSGYSGRDENVMTMLRAAIDQNNAFPHGLYWTVPSISKSEPAVQDLITYAQGKGVRAYLVETGTFDEMLSKIWRQVKDKPAAIDAKVRTARVCPVSIPLPGPGKSFPALRTNALPVVTQSIRCGVVTLASPITFSELKERISQKSPKALLTYTEKVLFLGGEPEIRKIFSNDEINSIGQYYIDEIAQSVAASTFLKSFVEEAILTALLREKPILHRVRHRTHYAVIPNASAKDDRFLDLRKAVGFKGDLGYITGNVTNAKELSWAEAVSIRLEERGGKLWIMLKPEIWIKPLDRREEATDFIRSRRRYRFNQCSYQILDAWIKILFGSIGGGGTVNISCFPDAEFKAEFEIGTRTAFSLGVGYGR
Sir2 superfamily protein I 587 Geobacter Sulfurreducens , Synthetic Construct MDVLTDNEFYQHYLQNSQHMMWFLGAGTSRSAGLPTASDIIWDLKHRYYCLHENQDYQKHDINNHAIKSKIQSYMDSKGFPLQWSPEEYSFYFELVFRDDYEAQRKYLLEALASRKVSLNIGHRVLAALLEMNQTKVVFTTNFDDVIETAFSDISGKHLSVYHLEGSYAALSALNTEAFPIYAKIHGDFRYQKIKNLTPDLQTNDREIHKCFLAAAIRFGLVVSGYSGRDENVMTMLRAAIDQNNAFPHGLYWTVPSISKSEPAVQDLITYAQGKGVRAYLVETGTFDEMLSKIWRQVKDKPAAIDAKVRTARVCPVSIPLPGPGKSFPALRTNALPVVTQSIRCGVVTLASPITFSELKERISQKSPKALLTYTEKVLFLGGEPEIRKIFSNDEINSIGQYYIDEIAQSVAASTFLKSFVEEAILTALLREKPILHRVRHRTHYAVIPNASAKDDRFLDLRKAVGFKGDLGYITGNVTNAKELSWAEAVSIRLEERGGKLWIMLKPEIWIKPLDRREEATDFIRSRRRYRFNQCSYQILDAWIKILFGSIGGGGTVNISCFPDAEFKAEFEIGTRTAFSLGVGYGR
Sir2 superfamily protein M 587 Geobacter Sulfurreducens , Synthetic Construct MDVLTDNEFYQHYLQNSQHMMWFLGAGTSRSAGLPTASDIIWDLKHRYYCLHENQDYQKHDINNHAIKSKIQSYMDSKGFPLQWSPEEYSFYFELVFRDDYEAQRKYLLEALASRKVSLNIGHRVLAALLEMNQTKVVFTTNFDDVIETAFSDISGKHLSVYHLEGSYAALSALNTEAFPIYAKIHGDFRYQKIKNLTPDLQTNDREIHKCFLAAAIRFGLVVSGYSGRDENVMTMLRAAIDQNNAFPHGLYWTVPSISKSEPAVQDLITYAQGKGVRAYLVETGTFDEMLSKIWRQVKDKPAAIDAKVRTARVCPVSIPLPGPGKSFPALRTNALPVVTQSIRCGVVTLASPITFSELKERISQKSPKALLTYTEKVLFLGGEPEIRKIFSNDEINSIGQYYIDEIAQSVAASTFLKSFVEEAILTALLREKPILHRVRHRTHYAVIPNASAKDDRFLDLRKAVGFKGDLGYITGNVTNAKELSWAEAVSIRLEERGGKLWIMLKPEIWIKPLDRREEATDFIRSRRRYRFNQCSYQILDAWIKILFGSIGGGGTVNISCFPDAEFKAEFEIGTRTAFSLGVGYGR
Piwi domain protein B 473 Geobacter Sulfurreducens , Synthetic Construct MADNLSQLAAHSTIPEPLLLFKDNRTDTHPLRGLSQYGPYSACFNLPGQVRLAYLAPTEHMRKLDAIVRELQNPATPKEATNYYVEYGGFEKVFKVPLVMPQEHLRCLALDECHGVAANGNGLALADKIVQSMSGLFRQKHAFDVLLVYLPASWKKCFEYDGFDLHDRIKAKVAPLNLPIQIINDTALTRQCRANVMWGVSVALYAKAGGIPWKLADWDKDEAYIGLSYAIKKNAEGQEYTTCCSQVFDPDGTGFEFVAYDTREFITDRKGNPYLSYQEMQSVLSKSLHLYQSSHNGRMPRKIFIHKTTHFTEDEIQGAFDSFSSSTEIELVQIIQSTNWYGLKVDGKKGDKPVAPASYPVDRGLYQPLTESECLLWTQGSVMGVNQQNPGQPVFKEAALTPLPNPIMLRRFSGNGGWHATCSSILALTKVDWNNNTLYKKLPVTLVYSQVFADVVKQTPEIVNEIYDYRFFM
Piwi domain protein F 473 Geobacter Sulfurreducens , Synthetic Construct MADNLSQLAAHSTIPEPLLLFKDNRTDTHPLRGLSQYGPYSACFNLPGQVRLAYLAPTEHMRKLDAIVRELQNPATPKEATNYYVEYGGFEKVFKVPLVMPQEHLRCLALDECHGVAANGNGLALADKIVQSMSGLFRQKHAFDVLLVYLPASWKKCFEYDGFDLHDRIKAKVAPLNLPIQIINDTALTRQCRANVMWGVSVALYAKAGGIPWKLADWDKDEAYIGLSYAIKKNAEGQEYTTCCSQVFDPDGTGFEFVAYDTREFITDRKGNPYLSYQEMQSVLSKSLHLYQSSHNGRMPRKIFIHKTTHFTEDEIQGAFDSFSSSTEIELVQIIQSTNWYGLKVDGKKGDKPVAPASYPVDRGLYQPLTESECLLWTQGSVMGVNQQNPGQPVFKEAALTPLPNPIMLRRFSGNGGWHATCSSILALTKVDWNNNTLYKKLPVTLVYSQVFADVVKQTPEIVNEIYDYRFFM
Piwi domain protein J 473 Geobacter Sulfurreducens , Synthetic Construct MADNLSQLAAHSTIPEPLLLFKDNRTDTHPLRGLSQYGPYSACFNLPGQVRLAYLAPTEHMRKLDAIVRELQNPATPKEATNYYVEYGGFEKVFKVPLVMPQEHLRCLALDECHGVAANGNGLALADKIVQSMSGLFRQKHAFDVLLVYLPASWKKCFEYDGFDLHDRIKAKVAPLNLPIQIINDTALTRQCRANVMWGVSVALYAKAGGIPWKLADWDKDEAYIGLSYAIKKNAEGQEYTTCCSQVFDPDGTGFEFVAYDTREFITDRKGNPYLSYQEMQSVLSKSLHLYQSSHNGRMPRKIFIHKTTHFTEDEIQGAFDSFSSSTEIELVQIIQSTNWYGLKVDGKKGDKPVAPASYPVDRGLYQPLTESECLLWTQGSVMGVNQQNPGQPVFKEAALTPLPNPIMLRRFSGNGGWHATCSSILALTKVDWNNNTLYKKLPVTLVYSQVFADVVKQTPEIVNEIYDYRFFM
Piwi domain protein N 473 Geobacter Sulfurreducens , Synthetic Construct MADNLSQLAAHSTIPEPLLLFKDNRTDTHPLRGLSQYGPYSACFNLPGQVRLAYLAPTEHMRKLDAIVRELQNPATPKEATNYYVEYGGFEKVFKVPLVMPQEHLRCLALDECHGVAANGNGLALADKIVQSMSGLFRQKHAFDVLLVYLPASWKKCFEYDGFDLHDRIKAKVAPLNLPIQIINDTALTRQCRANVMWGVSVALYAKAGGIPWKLADWDKDEAYIGLSYAIKKNAEGQEYTTCCSQVFDPDGTGFEFVAYDTREFITDRKGNPYLSYQEMQSVLSKSLHLYQSSHNGRMPRKIFIHKTTHFTEDEIQGAFDSFSSSTEIELVQIIQSTNWYGLKVDGKKGDKPVAPASYPVDRGLYQPLTESECLLWTQGSVMGVNQQNPGQPVFKEAALTPLPNPIMLRRFSGNGGWHATCSSILALTKVDWNNNTLYKKLPVTLVYSQVFADVVKQTPEIVNEIYDYRFFM

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
RNA (21-mer) c 21 NA AUUCCUGUUAGAGCUGUUAAC
RNA (21-mer) g 21 NA AUUCCUGUUAGAGCUGUUAAC
RNA (21-mer) k 21 NA AUUCCUGUUAGAGCUGUUAAC
RNA (21-mer) o 21 NA AUUCCUGUUAGAGCUGUUAAC
DNA (25-mer) d 25 NA AAGTTAACAGCTCTAACAGGAATAA
DNA (25-mer) h 25 NA AAGTTAACAGCTCTAACAGGAATAA
DNA (25-mer) l 25 NA AAGTTAACAGCTCTAACAGGAATAA
DNA (25-mer) p 25 NA AAGTTAACAGCTCTAACAGGAATAA
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2024-02-05
Deposition Author(s): Cui, N. , Jia, N. , Wei, X.Y. , Zhang, J.T.