ProModEv – Protein Model Evaluation Portal

A benchmarking platform for evaluating protein structure prediction methods such as AlphaFold, ESMFold, and other AI/ML-based approaches.

Access: http://pdbi.nii.ac.in/ProModEv/

SG-ML-PLAP

A structure-guided machine learning-based scoring function for protein-ligand binding affinity prediction.

SMMPPI

A computational platform for predicting small-molecule modulators of protein–protein interactions.

TF-DNA SAP – Structural Analysis Platform

A dedicated structural analysis platform for studying transcription factor–DNA complexes.

RNABPDB

A database and analytical toolkit for RNA base-pair interaction analysis in experimentally determined structures.

India-Centric Structural Resource

PDBi also hosts a dedicated web interface/dashboard titled "Biomolecular Structures in PDB from India", specifically developed to highlight structures solved by scientists and researchers from Indian institutions.

This platform enables easy browsing, visualization, and analysis of India-contributed structural data within the global PDB archive.