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FASTA Sequence PDB Format mmCIF Format
FASTA Sequence PDB Format PDB Format(gz) PDBx/mmCIF Format PDBx/mmCIF Format(gz) PDBML/XML Format Validation Full PDF Validation CIF

9ZCD

Flavobacterium johnsoniae 30s ribosomal subunit.

PDB DOI: 10.2210/pdb9zcd/pdb

Classification: RIBOSOME
Organism(s): Flavobacterium Johnsoniae

Deposited: 2025-11-23
Deposition Author(s): Arpin, D. , Ortega, J.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.7 Å

9zcd
Literature

Flavobacterium johnsoniae 30s ribosomal subunit.

Arpin, D. , Ortega, J.

Primary Citation of Related Structures: 9ZCD


Proteins
Molecule Chains Sequence Length Organism Sequence
30S ribosomal protein S1 A 591 Flavobacterium Johnsoniae MSEQTKSQEEFLANFNWHNFQEGIDAVDEKNLQEFEELVSKTFIATDQEEVVEGVVVRITDRDVIVDINAKSEGVISLNEFRYNPNLKVGDKVEVLIDIREDKTGQLVLSHRKARTIKSWDRVIAANETGEIVNGFVKCRTKGGMIVDVFGIEAFLPGSQIDVKPIRDYDVYVNKMMEFKVVKINHEFKNVVVSHKALIEADIEVQKKEIIGQLQKGQVLEGVVKNITSYGVFIDLGGVDGLIHITDLSWSRINHPSEVLELDQKLNVVILDFDDEKTRIQLGLKQLNAHPWDALDANLTVGDKVKGKVVVIADYGAFIEVAEGVEGLIHVSEMSWSTHLRSAQDFVKVGDVVEAVILTLDREDRKMSLGIKQLTQDPWTDITSKYPVGSKHTGIVRNFTNFGIFVELEEGIDGLIYISDLSWTKKIKHPSEFVNVGEKLDVVVLELDVEGRKLSLGHKQTTANPWDQYEDSFAVGTIHNGEISEIVDKGATVEFGDDIVAFIPTRHLEKEDGKKLKKGDTADFKVIEFNKEFKRVVASHTAIFREEEEKNVKAAAETTASASTNAPAATLGDNNDVLAALKAKMEKTEKK
30S ribosomal protein S10 O 101 Flavobacterium Johnsoniae MSQKIRIKLKSYDHMLVDKSAEKIVKTVKTTGAVVTGPIPLPTHKKLFTVLRSPHVNKKAREQFEVMSYKRLIDIYSSSSKTIDALMKLELPSGVEVEIKV
30S ribosomal protein S11 P 127 Flavobacterium Johnsoniae MAKATAKKRKVIVESTGEAHISSTFNNIIISLTNKKGEVIAWSSAGKMGFRGSKKNTPYAAQMAAEDCSKVALEAGLKKVKVYVKGPGNGRESAIRSIHNGGIEVTEIIDVTPMPHNGCRPPKRRRV
Small ribosomal subunit protein uS12 Q 127 Flavobacterium Johnsoniae MPTIQQLVRTGRTQITKKSKSVALDSCPQRRGVCTRVYTTTPKKPNSAMRKVARVRLTNGNEVNAYIPGEGHNLQEHSIVLVRGGRVKDLPGVRYHIVRGALDTSGVAGRTQRRSKYGAKRPKEAKK
30S ribosomal protein S13 R 124 Flavobacterium Johnsoniae MARIAGINIPDHKHAVIALTSIYGVGKTRSKAILAAAGIAEDVKISELSEGQIDTLRDEVAKFVVEGDLRREISMSIKRLMDLGCYRGLRHRRGLPVRGQRTKTNARTRKGPRKTVANKKKATK
30S ribosomal protein S14 S 89 Flavobacterium Johnsoniae MAKESMKAREVKREKTVAKYAEKRKALLEAGDYEGLQRLPKNASPVRLHNRCKLTGRPRGYIRQFGISRVTFREMANNGLIPGVKKASW
30S ribosomal protein S15 T 88 Flavobacterium Johnsoniae MYLTKEKKEEIFAQHGDAKNTGKAEGQIALFTYRISHLTEHLKKNRHDYNTERSLVLLVGKRRALLDYLKRKDINRYREIIKVLNIRK
Small ribosomal subunit protein bS16 U 188 Flavobacterium Johnsoniae MSVKIRLQRHGKKGKPFYWVVAADARSKRDGKYLEKIGTYNPNTNPATVELNLDSAVKWLHNGAQPTDTARAILSYKGALLKHHLDGGVRKGALTQEQADAKLTAWLEAKAGKVDAKKDGLSKAQADAKAKALKAEKEVNDKRIAAAAKAEADAIAAASATEEAATEEVAEAAEEAPAAEENNETTEA
30S ribosomal protein S17 V 86 Flavobacterium Johnsoniae MEEKRNLRKERIGVVTSNKMDKSIVISEVRKVKHPLYGKFVLKTKKYVAHDETNDCNIGDTVRISETRPLSKTKCWRLVEILERAK
30S ribosomal protein S18 W 98 Flavobacterium Johnsoniae MSTIEQSAKGKKDGDIRYLTPLNIETNKTKKYCRFKKSGIKYIDYKDADFLLKFVNEQGKILPRRLTGTSLKYQRKVSVAVKRARHLALMPYVADLLK
30S ribosomal protein S19 X 92 Flavobacterium Johnsoniae MARSLKKGPFVHYKLDKKVQENVESGKNSVVKTWSRASMITPDFVGQTIAVHNGRQFVPVYVTENMVGHKLGEFSPTRSFRGHAGAKNKGKK
30S ribosomal protein S3 H 252 Flavobacterium Johnsoniae MGQKTNPIGNRLGIIRGWDSNWYGGNDYGDKLAEDHKIRKYIHARLSKASVSKVIIERTLKLVTVTITTARPGIIIGKGGQEVDKLKEELKKVTDKEVQINIFEIKRPELDAYLVATSIARQIESRISYRRAIKMAIAASMRMNAEGIKVLISGRLNGAEMARSEGFKEGRIPLSTFRADIDYALAEAHTTYGRMGIKVWIMKGEVYGKRDLSPLAGMDKKQSGTGGGKGGDAPRGKSNFNKGGKPDARKRK
30S ribosomal protein S20 Y 83 Flavobacterium Johnsoniae MANHKSALKRIRSNEKRRVLNRYQHKTTRNAIKALRLATDKSDAAAKLSTVISMIDKLAKKNIIHDNKASNLKSKLTKHVAKL
30S ribosomal protein S21 Z 64 Flavobacterium Johnsoniae MLIIPIKDGENIDRALKRYKRKFDKTGTVRQLRARTAFIKPSVVKRAQIQKAAYIQTLKDSLES
30S ribosomal protein S4 I 201 Flavobacterium Johnsoniae MARYTGPKTKIARKFGEAIFGDDKSFEKRNYPPGQHGMAKKRGKKSEYAVQLMEKQKAKYSYGILEKQFRNLFEKASATKGVTGEVLLQLCEARLDNVVFRMGIAPSRRGARQIVSHRHITVNGEVVNIPSYHLKPGDKVAVREKSKSLEAIERSLSNSSHVYEWITWNNDLKEGTFVSVPARLQIPENIKEQLIVELYNK
30S ribosomal protein S5 J 173 Flavobacterium Johnsoniae MSKYKNVELVKPSGLELKDRLVSVNRVTKVTKGGRAFGFSAIVVVGDENGVVGHGLGKSKDVSEAIAKAVEDAKKNLVRIPLNGQSVPHEQKGKFGGARVFLIPASHGTGVIAGGAVRSVLESVGIHDVLSKSQGSSNPHNVVKATFDALLQMRSAHTVAKQRGVSLEKVFKG
30S ribosomal protein S6 K 113 Flavobacterium Johnsoniae MNHYETVFILNPVLSEVQVKETVTKFEEFLTSRGAEMVSKEDWGLKKMAYEIQNKKSGFYHLFEFKVAGEVLIAFETEFRRDERVMRFLTVSLDKHAISWAERRRAKLKSTKA
30S ribosomal protein S7 L 158 Flavobacterium Johnsoniae MRKRAAKKRPLLPDPRFNDQLVTRFVNNLMWDGKKSTAFKVFYDAIDIIETKKQNDEKTSLEIWKDALTNVMPHVEVRSRRVGGATFQIPMQIRPDRKISMAMKWLILYARRRNEKSMAQRLASECLAAAKEEGAAVKKRMDTHKMAEANKAFSHFRF
30S ribosomal protein S8 M 132 Flavobacterium Johnsoniae MYTDPIADYLTRVRNAVAANHKVVEIPASNLKKEITKILFDQGYILSYKFEQNTVQGSIKIALKYDKDTKEPVIKDIQRISKPGLRKYAGAAKLPRILNGLGIAIVSTSKGLMTGKQAKQLNVGGEVICYVY
30S ribosomal protein S9 N 128 Flavobacterium Johnsoniae MGVIHKIGRRKTAVARVYVSEGTGNITVNKKEFATYFPTATLQYKVLQPLSMTENVNNFDVKVNVYGGGTTGQAEAVRMALARVMCEVNAENRGILKPEGLLTRDPRMVERKKFGQKKARKRFQFSKR

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
16S rRNA 2 1520 NA UAUACGAUGAAGAGUUUGAUCCUGGCUCAGGAUGAACGCUAGCGGCAGGCUUAACACAUGCAAGUCGAGGGGUAGAAGUCUUCGGGCUUUGAGACCGGCGCACGGGUGCGUAACGCGUAUGCAAUCUGCCUUUCACAGAGGGAUAGCCCAGAGAAAUUUGGAUUAAUACCUCAUAGUAUUAUAGAGCGGCAUCACUUUAUAAUUAAAGUCACAACGGUGAAAGAUGAGCAUGCGUCCCAUUAGCUAGUUGGUAAGGUAACGGCUUACCAAGGCCACGAUGGGUAGGGGUCCUGAGAGGGAGAUCCCCCACACUGGUACUGAGACACGGACCAGACUCCUACGGGAGGCAGCAGUGAGGAAUAUUGGUCAAUGGACGCAAGUCUGAACCAGCCAUGCCGCGUGCAGGAUGACGGUCCUAUGGAUUGUAAACUGCUUUUGUACGAGAAGAAACACUCCUAUAUAUAGGAGCUUGACGGUAUCGUAAGAAUAAGGAUCGGCUAACUCCGUGCCAGCAGCCGCGGUAAUACGGAGGAUCCAAGCGUUAUCCGGAAUCACUGGGUUUAAAGGGUCCGUAGGCGGUUUAGUAAGUCAGUGGUGAAAGCCCAUCGCUCAACGGUGGAACGGCCAUUGAUACUGCUGAACUUGAAUUACUGGGAAGUAACUAGAAUAUGUAGUGUAGCGGUGAAAUGCUUAGAUAUUACAUGGAAUACCAAUUGCGAAGGCAGGUUACUACCAGUUUAUUGACGCUGAUGGACGAAAGCGUGGGGAGCGAACAGGAUUAGAUACCCUGGUAGUCCACGCCGUAAACGAUGGAUACUAGCUGUUGGGCGCAAGUUCAGUGGCUAAGCGAAAGUGAUAAGUAUCCCACCUGGGGAGUACGAACGCAAGUUUGAAACUCAAAGGAAUUGACGGGGGCCCGCACAAGCGGUGGAACAUGUGGUUUAAUUCGAUGAUACGCGAGGAACCUUACCAAGGCUUAAAUGCAGACUGACCGAUUUGGAAACAGAUCUUAUCGCAAGACAGUUUACAAGGUGCUGCAUGGUUGUCGUCAGCUCGUGCCGUGAGGUGUCAGGUUAAGUCCUAUAACGAGCGCAACCCCUGUUGUUAGUUGCCAGCGAGUGAUGUCGGGAACUCUAACAAGACUGCCAGUGCAAACUGUGAGGAAGGUGGGGAUGACGUCAAAUCAUCACGGCCCUUACGCCUUGGGCUACACACGUGCUACAAUGGCCGGUACAGAGAGCAGCCACUGGGUGACCAGGAGCGAAUCUAUAAAGCCGGUCACAGUUCGGAUCGGAGUCUGCAACUCGACUCCGUGAAGCUGGAAUCGCUAGUAAUCGGAUAUCAGCCAUGAUCCGGUGAAUACGUUCCCGGGCCUUGUACACACCGCCCGUCAAGCCAUGGAAGCUGGGGGUGCCUGAAGUCGGUGACCGCAAGGAGCUGCCUAGGGUAAAACUGGUAACUAGGGCUAAGUCGUAACAAGGUAGCCGUACCGGAAGGUGCGGCUGGAACACCUCCUUUCU
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2025-11-23
Deposition Author(s): Arpin, D. , Ortega, J.