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9ZBS

The cryo-em structure of pakpunavirus p7-1 neck (portal:h-t-t:collar:gateway)

PDB DOI: 10.2210/pdb9zbs/pdb

Classification: VIRAL PROTEIN
Organism(s): Pakpunavirus

Deposited: 2025-11-21
Deposition Author(s): Cingolani, G. , Li, F.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.6 Å

9zbs
Literature

The cryo-em structure of pakpunavirus p7-1 neck (portal:h-t-t:collar:gateway)

Cingolani, G. , Li, F.

Primary Citation of Related Structures: 9ZBS


Proteins
Molecule Chains Sequence Length Organism Sequence
Head-tail joining protein A 126 Pakpunavirus MLYPTFSMTNFVKLDLIRRGQPGDDGFGRPTPPVETVVTITANVQPIEKSTDTRILPEADRSKACFKVYSRGEEIRQLKEGPGGWSADRFMWEGELYEVMKVINYSMGILNHYKAICMRVERNSTA
Head-tail joining protein B 126 Pakpunavirus MLYPTFSMTNFVKLDLIRRGQPGDDGFGRPTPPVETVVTITANVQPIEKSTDTRILPEADRSKACFKVYSRGEEIRQLKEGPGGWSADRFMWEGELYEVMKVINYSMGILNHYKAICMRVERNSTA
Head-tail joining protein C 126 Pakpunavirus MLYPTFSMTNFVKLDLIRRGQPGDDGFGRPTPPVETVVTITANVQPIEKSTDTRILPEADRSKACFKVYSRGEEIRQLKEGPGGWSADRFMWEGELYEVMKVINYSMGILNHYKAICMRVERNSTA
Head-tail joining protein D 126 Pakpunavirus MLYPTFSMTNFVKLDLIRRGQPGDDGFGRPTPPVETVVTITANVQPIEKSTDTRILPEADRSKACFKVYSRGEEIRQLKEGPGGWSADRFMWEGELYEVMKVINYSMGILNHYKAICMRVERNSTA
Tail completion protein E 187 Pakpunavirus MIHTELENSLYLMVKELFPDWRVIQAYTNNQEPQTPYLAIDIKRLDELGRENVSNMSDPISPSHGTIQVQQDFAAKVVFELIGKYGETASVSDMAMAITRAMRTPAGHAAQRKFNLSLFKLPSTRRVPMLRETDMYMFYQVTCEFGFSVIETTTQEFAAGADIHGVYYDAGRPGHIIESHIDINFEH
Tail completion protein F 187 Pakpunavirus MIHTELENSLYLMVKELFPDWRVIQAYTNNQEPQTPYLAIDIKRLDELGRENVSNMSDPISPSHGTIQVQQDFAAKVVFELIGKYGETASVSDMAMAITRAMRTPAGHAAQRKFNLSLFKLPSTRRVPMLRETDMYMFYQVTCEFGFSVIETTTQEFAAGADIHGVYYDAGRPGHIIESHIDINFEH
Tail completion protein G 187 Pakpunavirus MIHTELENSLYLMVKELFPDWRVIQAYTNNQEPQTPYLAIDIKRLDELGRENVSNMSDPISPSHGTIQVQQDFAAKVVFELIGKYGETASVSDMAMAITRAMRTPAGHAAQRKFNLSLFKLPSTRRVPMLRETDMYMFYQVTCEFGFSVIETTTQEFAAGADIHGVYYDAGRPGHIIESHIDINFEH
Tail completion protein H 187 Pakpunavirus MIHTELENSLYLMVKELFPDWRVIQAYTNNQEPQTPYLAIDIKRLDELGRENVSNMSDPISPSHGTIQVQQDFAAKVVFELIGKYGETASVSDMAMAITRAMRTPAGHAAQRKFNLSLFKLPSTRRVPMLRETDMYMFYQVTCEFGFSVIETTTQEFAAGADIHGVYYDAGRPGHIIESHIDINFEH
Tail completion protein I 187 Pakpunavirus MIHTELENSLYLMVKELFPDWRVIQAYTNNQEPQTPYLAIDIKRLDELGRENVSNMSDPISPSHGTIQVQQDFAAKVVFELIGKYGETASVSDMAMAITRAMRTPAGHAAQRKFNLSLFKLPSTRRVPMLRETDMYMFYQVTCEFGFSVIETTTQEFAAGADIHGVYYDAGRPGHIIESHIDINFEH
Tail completion protein J 187 Pakpunavirus MIHTELENSLYLMVKELFPDWRVIQAYTNNQEPQTPYLAIDIKRLDELGRENVSNMSDPISPSHGTIQVQQDFAAKVVFELIGKYGETASVSDMAMAITRAMRTPAGHAAQRKFNLSLFKLPSTRRVPMLRETDMYMFYQVTCEFGFSVIETTTQEFAAGADIHGVYYDAGRPGHIIESHIDINFEH
Portal protein K 479 Pakpunavirus MAETEKTAPGIPRLRLGEIGSTGLKQVNGTILEERRPELRFPRACRTFQMMAEDPTIKSALDLFEMMMSRVDWEVDLGVDPDEAMKARGKFLKECMHDMEHSWYSFIKEVTSFYTYGFSVHEMVFKRREGYPVSKYNDNKFGIKKLPIRSQSTITKWLYSEDGRNFLGCEQSLANVVNGDRYVNLGNKDGTVEIPAKKMLLFRVDAKRDSPEGNSPLRACYNAWRYRVEIEEQESVGVTRDMNGMPTLYLPPRYMSEDATEAERAVYEYYKRVIRNIQMNEQSGLILPQAFDPESRQPLFKFELTSSQGSKMYDTDAIIRRWDNKILQALFADMLKMGQDQVGSYSLAGAKTNIMAMAIESRLREIKDVLDNKLIPTLFALNGDYSPDLPKLQYGELDEIDLEEFSKGIQRIGSVGGLERDREVYNKIRKALKIKPRPDDEPVDVDNIMGGQSQAGKAGVGNGASTSAAGRDNAAANNA
Portal protein L 479 Pakpunavirus MAETEKTAPGIPRLRLGEIGSTGLKQVNGTILEERRPELRFPRACRTFQMMAEDPTIKSALDLFEMMMSRVDWEVDLGVDPDEAMKARGKFLKECMHDMEHSWYSFIKEVTSFYTYGFSVHEMVFKRREGYPVSKYNDNKFGIKKLPIRSQSTITKWLYSEDGRNFLGCEQSLANVVNGDRYVNLGNKDGTVEIPAKKMLLFRVDAKRDSPEGNSPLRACYNAWRYRVEIEEQESVGVTRDMNGMPTLYLPPRYMSEDATEAERAVYEYYKRVIRNIQMNEQSGLILPQAFDPESRQPLFKFELTSSQGSKMYDTDAIIRRWDNKILQALFADMLKMGQDQVGSYSLAGAKTNIMAMAIESRLREIKDVLDNKLIPTLFALNGDYSPDLPKLQYGELDEIDLEEFSKGIQRIGSVGGLERDREVYNKIRKALKIKPRPDDEPVDVDNIMGGQSQAGKAGVGNGASTSAAGRDNAAANNA
Head to Tail protein gp72 M 158 Pakpunavirus MAYTGDPANNPIDRLREIVGDVWEPPMLSDETYQWVLDKNEGNERRAALELMRMMLFRLTRGMRERTGDIEVYGAEYFNNYLKALQLILKDPNIAISLAVPYAGGISKSDMLANDLDPDNVTREFYIGFARREKLYNQCNPGPQDLSMGCDYLGKLQF
Head to Tail protein gp72 N 158 Pakpunavirus MAYTGDPANNPIDRLREIVGDVWEPPMLSDETYQWVLDKNEGNERRAALELMRMMLFRLTRGMRERTGDIEVYGAEYFNNYLKALQLILKDPNIAISLAVPYAGGISKSDMLANDLDPDNVTREFYIGFARREKLYNQCNPGPQDLSMGCDYLGKLQF
Head to Tail protein gp72 O 158 Pakpunavirus MAYTGDPANNPIDRLREIVGDVWEPPMLSDETYQWVLDKNEGNERRAALELMRMMLFRLTRGMRERTGDIEVYGAEYFNNYLKALQLILKDPNIAISLAVPYAGGISKSDMLANDLDPDNVTREFYIGFARREKLYNQCNPGPQDLSMGCDYLGKLQF
Head to Tail protein gp72 P 158 Pakpunavirus MAYTGDPANNPIDRLREIVGDVWEPPMLSDETYQWVLDKNEGNERRAALELMRMMLFRLTRGMRERTGDIEVYGAEYFNNYLKALQLILKDPNIAISLAVPYAGGISKSDMLANDLDPDNVTREFYIGFARREKLYNQCNPGPQDLSMGCDYLGKLQF
Head to Tail protein gp72 Q 158 Pakpunavirus MAYTGDPANNPIDRLREIVGDVWEPPMLSDETYQWVLDKNEGNERRAALELMRMMLFRLTRGMRERTGDIEVYGAEYFNNYLKALQLILKDPNIAISLAVPYAGGISKSDMLANDLDPDNVTREFYIGFARREKLYNQCNPGPQDLSMGCDYLGKLQF
Head to Tail protein gp72 R 158 Pakpunavirus MAYTGDPANNPIDRLREIVGDVWEPPMLSDETYQWVLDKNEGNERRAALELMRMMLFRLTRGMRERTGDIEVYGAEYFNNYLKALQLILKDPNIAISLAVPYAGGISKSDMLANDLDPDNVTREFYIGFARREKLYNQCNPGPQDLSMGCDYLGKLQF
Head to Tail protein gp72 S 158 Pakpunavirus MAYTGDPANNPIDRLREIVGDVWEPPMLSDETYQWVLDKNEGNERRAALELMRMMLFRLTRGMRERTGDIEVYGAEYFNNYLKALQLILKDPNIAISLAVPYAGGISKSDMLANDLDPDNVTREFYIGFARREKLYNQCNPGPQDLSMGCDYLGKLQF
Head to Tail protein gp72 T 158 Pakpunavirus MAYTGDPANNPIDRLREIVGDVWEPPMLSDETYQWVLDKNEGNERRAALELMRMMLFRLTRGMRERTGDIEVYGAEYFNNYLKALQLILKDPNIAISLAVPYAGGISKSDMLANDLDPDNVTREFYIGFARREKLYNQCNPGPQDLSMGCDYLGKLQF
Head to Tail protein gp72 U 158 Pakpunavirus MAYTGDPANNPIDRLREIVGDVWEPPMLSDETYQWVLDKNEGNERRAALELMRMMLFRLTRGMRERTGDIEVYGAEYFNNYLKALQLILKDPNIAISLAVPYAGGISKSDMLANDLDPDNVTREFYIGFARREKLYNQCNPGPQDLSMGCDYLGKLQF
Head to Tail protein gp72 V 158 Pakpunavirus MAYTGDPANNPIDRLREIVGDVWEPPMLSDETYQWVLDKNEGNERRAALELMRMMLFRLTRGMRERTGDIEVYGAEYFNNYLKALQLILKDPNIAISLAVPYAGGISKSDMLANDLDPDNVTREFYIGFARREKLYNQCNPGPQDLSMGCDYLGKLQF
Head to Tail protein gp72 W 158 Pakpunavirus MAYTGDPANNPIDRLREIVGDVWEPPMLSDETYQWVLDKNEGNERRAALELMRMMLFRLTRGMRERTGDIEVYGAEYFNNYLKALQLILKDPNIAISLAVPYAGGISKSDMLANDLDPDNVTREFYIGFARREKLYNQCNPGPQDLSMGCDYLGKLQF
Head to Tail protein gp72 X 158 Pakpunavirus MAYTGDPANNPIDRLREIVGDVWEPPMLSDETYQWVLDKNEGNERRAALELMRMMLFRLTRGMRERTGDIEVYGAEYFNNYLKALQLILKDPNIAISLAVPYAGGISKSDMLANDLDPDNVTREFYIGFARREKLYNQCNPGPQDLSMGCDYLGKLQF
Head-tail joining protein Y 126 Pakpunavirus MLYPTFSMTNFVKLDLIRRGQPGDDGFGRPTPPVETVVTITANVQPIEKSTDTRILPEADRSKACFKVYSRGEEIRQLKEGPGGWSADRFMWEGELYEVMKVINYSMGILNHYKAICMRVERNSTA
Head-tail joining protein Z 126 Pakpunavirus MLYPTFSMTNFVKLDLIRRGQPGDDGFGRPTPPVETVVTITANVQPIEKSTDTRILPEADRSKACFKVYSRGEEIRQLKEGPGGWSADRFMWEGELYEVMKVINYSMGILNHYKAICMRVERNSTA
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2025-11-21
Deposition Author(s): Cingolani, G. , Li, F.