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9Z6Y

Structure of the elongating ecdrt3 reverse transcriptase in complex with its non-coding rna

PDB DOI: 10.2210/pdb9z6y/pdb

Classification: IMMUNE SYSTEM
Organism(s): Escherichia Coli

Deposited: 2025-11-14
Deposition Author(s): Deng, P. , Gao, A.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.6 Å

9z6y
Literature

Structure of the elongating ecdrt3 reverse transcriptase in complex with its non-coding rna

Deng, P. , Gao, A.

Primary Citation of Related Structures: 9Z6Y


Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
cDNA (5'-D(P*CP*AP*CP*AP*CP*AP*CP*AP*CP*AP*CP*AP*CP*AP*CP*AP*CP*A)-3') a 18 NA CACACACACACACACACA
cDNA (5'-D(P*TP*GP*TP*GP*TP*GP*TP*GP*TP*GP*TP*GP*TP*GP*TP*GP*T)-3') b 17 NA TGTGTGTGTGTGTGTGT
cDNA (5'-D(P*CP*AP*CP*AP*CP*AP*CP*AP*CP*AP*CP*AP*CP*AP*CP*AP*CP*A)-3') c 18 NA CACACACACACACACACA
cDNA (5'-D(P*TP*GP*TP*GP*TP*GP*TP*GP*TP*GP*TP*GP*TP*GP*TP*GP*T)-3') d 17 NA TGTGTGTGTGTGTGTGT
cDNA (5'-D(P*CP*AP*CP*AP*CP*AP*CP*AP*CP*AP*CP*AP*CP*AP*CP*AP*CP*A)-3') e 18 NA CACACACACACACACACA
cDNA (5'-D(P*TP*GP*TP*GP*TP*GP*TP*GP*TP*GP*TP*GP*TP*GP*TP*GP*T)-3') f 17 NA TGTGTGTGTGTGTGTGT
cDNA (5'-D(P*TP*GP*TP*GP*TP*GP*TP*GP*TP*GP*TP*GP*TP*GP*TP*GP*T)-3') h 17 NA TGTGTGTGTGTGTGTGT
cDNA (5'-D(P*CP*AP*CP*AP*CP*AP*CP*AP*CP*AP*CP*AP*CP*AP*CP*AP*CP*A)-3') i 18 NA CACACACACACACACACA
non-coding RNA r 138 NA AAUGCAACCAAUAUGCCCUACACGAUUUUUCGAUAUACUAGGGCUGAUUACGGUAGGUAAGUUACACGUAACCUUAGCUACCUUAUGACGCUCAAGAGCAGCAAUGCACACACUAAGGGAUGAGGUUGCUUCAAUUUC
non-coding RNA s 138 NA AAUGCAACCAAUAUGCCCUACACGAUUUUUCGAUAUACUAGGGCUGAUUACGGUAGGUAAGUUACACGUAACCUUAGCUACCUUAUGACGCUCAAGAGCAGCAAUGCACACACUAAGGGAUGAGGUUGCUUCAAUUUC
non-coding RNA t 138 NA AAUGCAACCAAUAUGCCCUACACGAUUUUUCGAUAUACUAGGGCUGAUUACGGUAGGUAAGUUACACGUAACCUUAGCUACCUUAUGACGCUCAAGAGCAGCAAUGCACACACUAAGGGAUGAGGUUGCUUCAAUUUC
non-coding RNA u 138 NA AAUGCAACCAAUAUGCCCUACACGAUUUUUCGAUAUACUAGGGCUGAUUACGGUAGGUAAGUUACACGUAACCUUAGCUACCUUAUGACGCUCAAGAGCAGCAAUGCACACACUAAGGGAUGAGGUUGCUUCAAUUUC
non-coding RNA v 138 NA AAUGCAACCAAUAUGCCCUACACGAUUUUUCGAUAUACUAGGGCUGAUUACGGUAGGUAAGUUACACGUAACCUUAGCUACCUUAUGACGCUCAAGAGCAGCAAUGCACACACUAAGGGAUGAGGUUGCUUCAAUUUC
non-coding RNA w 138 NA AAUGCAACCAAUAUGCCCUACACGAUUUUUCGAUAUACUAGGGCUGAUUACGGUAGGUAAGUUACACGUAACCUUAGCUACCUUAUGACGCUCAAGAGCAGCAAUGCACACACUAAGGGAUGAGGUUGCUUCAAUUUC
cDNA (5'-D(P*TP*GP*TP*GP*TP*GP*TP*GP*TP*GP*TP*GP*TP*GP*TP*GP*T)-3') x 17 NA TGTGTGTGTGTGTGTGT
cDNA (5'-D(P*TP*GP*TP*GP*TP*GP*TP*GP*TP*GP*TP*GP*TP*GP*TP*GP*T)-3') z 17 NA TGTGTGTGTGTGTGTGT
cDNA (5'-D(P*CP*AP*CP*AP*CP*AP*CP*AP*CP*AP*CP*AP*CP*AP*CP*AP*CP*A)-3') y 18 NA CACACACACACACACACA
cDNA (5'-D(P*CP*AP*CP*AP*CP*AP*CP*AP*CP*AP*CP*AP*CP*AP*CP*AP*CP*A)-3') g 18 NA CACACACACACACACACA

Proteins
Molecule Chains Sequence Length Organism Sequence
Drt3b reverse transcriptase protein J 650 Escherichia Coli MSKKKEVRVNKKDFNRVLVTETIPYETPIIVSNDGFYNNVVKHQTANDIAKLLTQRVILGERKKGRYTIPYVFKINKNETEFRRLAFPHPISQIEMRDFYLHFNQVMINFCSKSDFSIRRPVKVASTYYYKNLLEDKNLYKRGPVDTDKNELLTRHASSYFGYHGYDRLYKFFMSNDFIDLERKYNTLYTLDVSKCFDSIYTHSISWATKTKTFTKGMLANKSLNFGDAFDKLMQRCNFNETHGVIIGPEISRIFAEIIFQKIDLNVQFKLRNIDTPLNKGVDYDIRRYVDDVFIFSKNEVNAEIIYKVYADKLNEYNMHVNLGKVTKNSRPFITAKTQIIHHVNQKMNVFIDSFLSYDDEMKLIAKPIYNNRKLANKFIDEVKIICSERKSGYGEVSSYIVSAIFERIKRLTSSVNQAEDKDIYNVMYVLLHISLFFFRVAPSVSSSYKLASILIVTLRYFKAQVPSYSDLIASYIYFEIEDFLKAAKNGKKTIDNLVSLEAYNIMYVIGELDQDRYLSKQLVEDVFSEVDSYFDIVSCLYIVKDKKVYDSLKNNIIDVINSKLMSSDNILDYSEKAMLFLDVMSCPYIDLKWKKIWLKSILKELQEATPNNNEIDSFISYSVANPWFVDWSNVDLLNFLEKKQLKKAY
Drt3b reverse transcriptase protein K 650 Escherichia Coli MSKKKEVRVNKKDFNRVLVTETIPYETPIIVSNDGFYNNVVKHQTANDIAKLLTQRVILGERKKGRYTIPYVFKINKNETEFRRLAFPHPISQIEMRDFYLHFNQVMINFCSKSDFSIRRPVKVASTYYYKNLLEDKNLYKRGPVDTDKNELLTRHASSYFGYHGYDRLYKFFMSNDFIDLERKYNTLYTLDVSKCFDSIYTHSISWATKTKTFTKGMLANKSLNFGDAFDKLMQRCNFNETHGVIIGPEISRIFAEIIFQKIDLNVQFKLRNIDTPLNKGVDYDIRRYVDDVFIFSKNEVNAEIIYKVYADKLNEYNMHVNLGKVTKNSRPFITAKTQIIHHVNQKMNVFIDSFLSYDDEMKLIAKPIYNNRKLANKFIDEVKIICSERKSGYGEVSSYIVSAIFERIKRLTSSVNQAEDKDIYNVMYVLLHISLFFFRVAPSVSSSYKLASILIVTLRYFKAQVPSYSDLIASYIYFEIEDFLKAAKNGKKTIDNLVSLEAYNIMYVIGELDQDRYLSKQLVEDVFSEVDSYFDIVSCLYIVKDKKVYDSLKNNIIDVINSKLMSSDNILDYSEKAMLFLDVMSCPYIDLKWKKIWLKSILKELQEATPNNNEIDSFISYSVANPWFVDWSNVDLLNFLEKKQLKKAY
Drt3b reverse transcriptase protein L 650 Escherichia Coli MSKKKEVRVNKKDFNRVLVTETIPYETPIIVSNDGFYNNVVKHQTANDIAKLLTQRVILGERKKGRYTIPYVFKINKNETEFRRLAFPHPISQIEMRDFYLHFNQVMINFCSKSDFSIRRPVKVASTYYYKNLLEDKNLYKRGPVDTDKNELLTRHASSYFGYHGYDRLYKFFMSNDFIDLERKYNTLYTLDVSKCFDSIYTHSISWATKTKTFTKGMLANKSLNFGDAFDKLMQRCNFNETHGVIIGPEISRIFAEIIFQKIDLNVQFKLRNIDTPLNKGVDYDIRRYVDDVFIFSKNEVNAEIIYKVYADKLNEYNMHVNLGKVTKNSRPFITAKTQIIHHVNQKMNVFIDSFLSYDDEMKLIAKPIYNNRKLANKFIDEVKIICSERKSGYGEVSSYIVSAIFERIKRLTSSVNQAEDKDIYNVMYVLLHISLFFFRVAPSVSSSYKLASILIVTLRYFKAQVPSYSDLIASYIYFEIEDFLKAAKNGKKTIDNLVSLEAYNIMYVIGELDQDRYLSKQLVEDVFSEVDSYFDIVSCLYIVKDKKVYDSLKNNIIDVINSKLMSSDNILDYSEKAMLFLDVMSCPYIDLKWKKIWLKSILKELQEATPNNNEIDSFISYSVANPWFVDWSNVDLLNFLEKKQLKKAY
Drt3b reverse transcriptase protein M 650 Escherichia Coli MSKKKEVRVNKKDFNRVLVTETIPYETPIIVSNDGFYNNVVKHQTANDIAKLLTQRVILGERKKGRYTIPYVFKINKNETEFRRLAFPHPISQIEMRDFYLHFNQVMINFCSKSDFSIRRPVKVASTYYYKNLLEDKNLYKRGPVDTDKNELLTRHASSYFGYHGYDRLYKFFMSNDFIDLERKYNTLYTLDVSKCFDSIYTHSISWATKTKTFTKGMLANKSLNFGDAFDKLMQRCNFNETHGVIIGPEISRIFAEIIFQKIDLNVQFKLRNIDTPLNKGVDYDIRRYVDDVFIFSKNEVNAEIIYKVYADKLNEYNMHVNLGKVTKNSRPFITAKTQIIHHVNQKMNVFIDSFLSYDDEMKLIAKPIYNNRKLANKFIDEVKIICSERKSGYGEVSSYIVSAIFERIKRLTSSVNQAEDKDIYNVMYVLLHISLFFFRVAPSVSSSYKLASILIVTLRYFKAQVPSYSDLIASYIYFEIEDFLKAAKNGKKTIDNLVSLEAYNIMYVIGELDQDRYLSKQLVEDVFSEVDSYFDIVSCLYIVKDKKVYDSLKNNIIDVINSKLMSSDNILDYSEKAMLFLDVMSCPYIDLKWKKIWLKSILKELQEATPNNNEIDSFISYSVANPWFVDWSNVDLLNFLEKKQLKKAY
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2025-11-14
Deposition Author(s): Deng, P. , Gao, A.