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9Z3J
Hcov-nl63 s2' peptide bound to tmprss2 s441a (complexed with the h1h7 fab and an anti-kappa-nanobody)
PDB DOI: 10.2210/pdb9z3j/pdb
Classification: VIRAL PROTEIN/Immune System Organism(s): Homo Sapiens , Human Coronavirus Nl63 , Lama Glama
Deposited: 2025-11-06 Deposition Author(s): Mccallum, M. , Seattle Structural Genomics Center For Infectious Disease (Ssgcid) , Veesler, D.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 2.8 Å
Hcov-nl63 s2' peptide bound to tmprss2 s441a (complexed with the h1h7 fab and an anti-kappa-nanobody)
Mccallum, M. , Seattle Structural Genomics Center For Infectious Disease (Ssgcid) , Veesler, D.
Primary Citation of Related Structures: 9Z3J
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| HCoV-NL63 S2' peptide | A | 15 | Homo Sapiens , Human Coronavirus Nl63 , Lama Glama | RIAGRSALEDLLFSK |
| Inactive TMPRSS2 construct | B | 519 | Homo Sapiens , Human Coronavirus Nl63 , Lama Glama | MTRLTVLALLAGLLASSRASMSDSEVNQEAKPEVKPEVKPETHINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHRENDDDDKTTGSKCSNSGIECDSSGTCINPSNWCDGVSHCPGGEDENRCVRLYGPNFILQVYSSQRKSWHPVCQDDWNENYGRAACRDMGYKNNFYSSQGIVDDSGSTSFMKLNTSAGNVDIYKKLYHSDACSSKAVVSLRCIACGVNLNDDDDKIVGGESALPGAWPWQVSLHVQNVHVCGGSIITPEWIVTAAHCVEKPLNNPWHWTAFAGILRQSFMFYGAGYQVEKVISHPNYDSKTKNNDIALMKLQKPLTFNDLVKPVCLPNPGMMLQPEQLCWISGWGATEEKGKTSEVLNAAKVLLIETQRCNSRYVYDNLITPAMICAGFLQGNVDSCQGDAGGPLVCSKNNIWWLIGDTSWGSGCAKAYRPGVYGNVMVFTDWIYRQMRADGDDDDKSGHHHHHHHH |
| H1H7 heavy chain | H | 223 | Homo Sapiens , Human Coronavirus Nl63 , Lama Glama | QVQLVESGGGVVQPGRSLRLSCAASGFTFSSYGMHWVRQSPGKGLEWVAVIWNDGSYVYYADSVKGRFTISRDISKNTLFLQMNSLRAEDTAVYYCAREGEWVLYYFDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSC |
| H1H7 light chain | L | 214 | Homo Sapiens , Human Coronavirus Nl63 , Lama Glama | DIQMTQSPSTLSASVGDRVTITCRASQSISSWLAWYQQKPGKAPKLLIYKASTLESGVPSRFSGSGSGTEFTLTISSLQPDDFATYYCQQYNSYSYTFGQGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC |
| anti-kappa nanobody | N | 159 | Homo Sapiens , Human Coronavirus Nl63 , Lama Glama | MKKTAIAIAVALAGFATVAQAAPMGSQVQLQESGGGLVQPGGSLRLSCAASGRTISRYAMSWFRQAPGKEREFVAVARRSGDGAFYADSVQGRFTVSRDDAKNTVYLQMNSLKPEDTAVYYCAIDSDTFYSGSYDYWGQGTQVTVSSHHHHHHHHEPEA |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2025-11-06 Deposition Author(s): Mccallum, M. , Seattle Structural Genomics Center For Infectious Disease (Ssgcid) , Veesler, D.