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FASTA Sequence PDB Format mmCIF Format
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9YMJ

Rqd20_wk56_28 fab in complex with v703-0537_l14 sosip and 3bnc117 fab

PDB DOI: 10.2210/pdb9ymj/pdb

Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Organism(s): Homo Sapiens , Human Immunodeficiency Virus 1 , Macaca Mulatta

Deposited: 2025-10-10
Deposition Author(s): Ozorowski, G. , Phulera, S. , Ward, A.B.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.4 Å

9ymj
Literature

Rqd20_wk56_28 fab in complex with v703-0537_l14 sosip and 3bnc117 fab

Ozorowski, G. , Phulera, S. , Ward, A.B.

Primary Citation of Related Structures: 9YMJ


Proteins
Molecule Chains Sequence Length Organism Sequence
3BNC117 Fab heavy chain D 226 Homo Sapiens , Human Immunodeficiency Virus 1 , Macaca Mulatta QVQLLQSGAAVTKPGASVRVSCEASGYNIRDYFIHWWRQAPGQGLQWVGWINPKTGQPNNPRQFQGRVSLTRHASWDFDTYSFYMDLKALRSDDTAVYFCARQRSDYWDFDVWGSGTQVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSC
3BNC117 Fab heavy chain F 226 Homo Sapiens , Human Immunodeficiency Virus 1 , Macaca Mulatta QVQLLQSGAAVTKPGASVRVSCEASGYNIRDYFIHWWRQAPGQGLQWVGWINPKTGQPNNPRQFQGRVSLTRHASWDFDTYSFYMDLKALRSDDTAVYFCARQRSDYWDFDVWGSGTQVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSC
3BNC117 Fab heavy chain J 226 Homo Sapiens , Human Immunodeficiency Virus 1 , Macaca Mulatta QVQLLQSGAAVTKPGASVRVSCEASGYNIRDYFIHWWRQAPGQGLQWVGWINPKTGQPNNPRQFQGRVSLTRHASWDFDTYSFYMDLKALRSDDTAVYFCARQRSDYWDFDVWGSGTQVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSC
3BNC117 light chain E 206 Homo Sapiens , Human Immunodeficiency Virus 1 , Macaca Mulatta DIQMTQSPSSLSASVGDTVTITCQANGYLNWYQQRRGKAPKLLIYDGSKLERGVPSRFSGRRWGQEYNLTINNLQPEDIATYFCQVYEFVVPGTRLDLKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
3BNC117 light chain G 206 Homo Sapiens , Human Immunodeficiency Virus 1 , Macaca Mulatta DIQMTQSPSSLSASVGDTVTITCQANGYLNWYQQRRGKAPKLLIYDGSKLERGVPSRFSGRRWGQEYNLTINNLQPEDIATYFCQVYEFVVPGTRLDLKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
3BNC117 light chain K 206 Homo Sapiens , Human Immunodeficiency Virus 1 , Macaca Mulatta DIQMTQSPSSLSASVGDTVTITCQANGYLNWYQQRRGKAPKLLIYDGSKLERGVPSRFSGRRWGQEYNLTINNLQPEDIATYFCQVYEFVVPGTRLDLKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
RQd20_wk56_28 Fab heavy chain H 231 Homo Sapiens , Human Immunodeficiency Virus 1 , Macaca Mulatta QVHLQESGPGLVKPGETLSLTCGLSGAAIRDWWWTWVRQAPGKGLEWIGEIYGRDGSTHYNPSLKSRVTISRDASKNHFSLRVTSVTAADTAVYFCARVGPIYGVVFLGEFYHGFESWGQGVVVAVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSC
RQd20_wk56_28 Fab heavy chain I 231 Homo Sapiens , Human Immunodeficiency Virus 1 , Macaca Mulatta QVHLQESGPGLVKPGETLSLTCGLSGAAIRDWWWTWVRQAPGKGLEWIGEIYGRDGSTHYNPSLKSRVTISRDASKNHFSLRVTSVTAADTAVYFCARVGPIYGVVFLGEFYHGFESWGQGVVVAVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSC
RQd20_wk56_28 Fab heavy chain N 231 Homo Sapiens , Human Immunodeficiency Virus 1 , Macaca Mulatta QVHLQESGPGLVKPGETLSLTCGLSGAAIRDWWWTWVRQAPGKGLEWIGEIYGRDGSTHYNPSLKSRVTISRDASKNHFSLRVTSVTAADTAVYFCARVGPIYGVVFLGEFYHGFESWGQGVVVAVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSC
RQd20_wk56_28 light chain L 212 Homo Sapiens , Human Immunodeficiency Virus 1 , Macaca Mulatta SFELTQPPSVSAASGQTAKITCGGDNIGSLSVHWYQQSPPQAPVVLIYRDYRRPSGIPERFSGSHSGNTATLTINRVEAGDEADYYCQVWDSNNYIFGTGTRLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS
RQd20_wk56_28 light chain M 212 Homo Sapiens , Human Immunodeficiency Virus 1 , Macaca Mulatta SFELTQPPSVSAASGQTAKITCGGDNIGSLSVHWYQQSPPQAPVVLIYRDYRRPSGIPERFSGSHSGNTATLTINRVEAGDEADYYCQVWDSNNYIFGTGTRLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS
RQd20_wk56_28 light chain O 212 Homo Sapiens , Human Immunodeficiency Virus 1 , Macaca Mulatta SFELTQPPSVSAASGQTAKITCGGDNIGSLSVHWYQQSPPQAPVVLIYRDYRRPSGIPERFSGSHSGNTATLTINRVEAGDEADYYCQVWDSNNYIFGTGTRLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS
V703-0537_L14 SOSIP A 654 Homo Sapiens , Human Immunodeficiency Virus 1 , Macaca Mulatta ETGAEDLWVTVYYGVPVWRDAITTLFCASDAKAYEKEVHNVWATHACVPTDPNPQEMVLENVTENFNMWKNNMVDQMHEDIISLWDQSLKPCVQLTPLCVTLNCTDVVGNNTATRRNNTATRRNNTATINDTDTGIKNCSFNITTEVRDKKKKVHALFYRLDIVPIDGKNSNSTEYILINCNTSVITQICPKVSFDPIPIHYCAPAGYAILKCNNKTFNGTGPCNNVSTIQCTHGIKPVVSTQLLLNGSLAEEDIIISSENMTDNTKTIIVHFNESVGIECTRPNNNTVESIRIGPGQTFYVTGEIIGDIRQAHCNISKGNWSKTLQRVKEKLKKYYHNKTIKFEPSSGGDLEITTHSFNCRGEFFYCYTSGLFNESIVNGTNGTITLPCRIKQIVNMWQKVGRAMYAPPIAGNITCSSNITGLLLTRDGGRGTNGTETFRPAGGNMKDNWRSELYKYKVVEIKPLGIAPTKCRRRVVGSHSGSGGSGSGGHAAVLGTAILGFLGAAGSTMGAASNALFVQTRQLLSGFVQQQSNLPKAPKAQQQLLQLGVWGIKQLQTRVLAIERYLEVQQFLGLWGCSGKAICCTAVPWNTTWSNKSEQEIWNNMTWMQWDREVGNYTDTIYKLLFVAQFQQEINEVDLLALNGTKHHHHHH
V703-0537_L14 SOSIP B 654 Homo Sapiens , Human Immunodeficiency Virus 1 , Macaca Mulatta ETGAEDLWVTVYYGVPVWRDAITTLFCASDAKAYEKEVHNVWATHACVPTDPNPQEMVLENVTENFNMWKNNMVDQMHEDIISLWDQSLKPCVQLTPLCVTLNCTDVVGNNTATRRNNTATRRNNTATINDTDTGIKNCSFNITTEVRDKKKKVHALFYRLDIVPIDGKNSNSTEYILINCNTSVITQICPKVSFDPIPIHYCAPAGYAILKCNNKTFNGTGPCNNVSTIQCTHGIKPVVSTQLLLNGSLAEEDIIISSENMTDNTKTIIVHFNESVGIECTRPNNNTVESIRIGPGQTFYVTGEIIGDIRQAHCNISKGNWSKTLQRVKEKLKKYYHNKTIKFEPSSGGDLEITTHSFNCRGEFFYCYTSGLFNESIVNGTNGTITLPCRIKQIVNMWQKVGRAMYAPPIAGNITCSSNITGLLLTRDGGRGTNGTETFRPAGGNMKDNWRSELYKYKVVEIKPLGIAPTKCRRRVVGSHSGSGGSGSGGHAAVLGTAILGFLGAAGSTMGAASNALFVQTRQLLSGFVQQQSNLPKAPKAQQQLLQLGVWGIKQLQTRVLAIERYLEVQQFLGLWGCSGKAICCTAVPWNTTWSNKSEQEIWNNMTWMQWDREVGNYTDTIYKLLFVAQFQQEINEVDLLALNGTKHHHHHH
V703-0537_L14 SOSIP C 654 Homo Sapiens , Human Immunodeficiency Virus 1 , Macaca Mulatta ETGAEDLWVTVYYGVPVWRDAITTLFCASDAKAYEKEVHNVWATHACVPTDPNPQEMVLENVTENFNMWKNNMVDQMHEDIISLWDQSLKPCVQLTPLCVTLNCTDVVGNNTATRRNNTATRRNNTATINDTDTGIKNCSFNITTEVRDKKKKVHALFYRLDIVPIDGKNSNSTEYILINCNTSVITQICPKVSFDPIPIHYCAPAGYAILKCNNKTFNGTGPCNNVSTIQCTHGIKPVVSTQLLLNGSLAEEDIIISSENMTDNTKTIIVHFNESVGIECTRPNNNTVESIRIGPGQTFYVTGEIIGDIRQAHCNISKGNWSKTLQRVKEKLKKYYHNKTIKFEPSSGGDLEITTHSFNCRGEFFYCYTSGLFNESIVNGTNGTITLPCRIKQIVNMWQKVGRAMYAPPIAGNITCSSNITGLLLTRDGGRGTNGTETFRPAGGNMKDNWRSELYKYKVVEIKPLGIAPTKCRRRVVGSHSGSGGSGSGGHAAVLGTAILGFLGAAGSTMGAASNALFVQTRQLLSGFVQQQSNLPKAPKAQQQLLQLGVWGIKQLQTRVLAIERYLEVQQFLGLWGCSGKAICCTAVPWNTTWSNKSEQEIWNNMTWMQWDREVGNYTDTIYKLLFVAQFQQEINEVDLLALNGTKHHHHHH
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2025-10-10
Deposition Author(s): Ozorowski, G. , Phulera, S. , Ward, A.B.