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FASTA Sequence PDB Format mmCIF Format
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9YEM

Cryo-em structure of triple-bound fdg antibody vrc49.01 in complex with hiv-1 env bg505 ds-sosip trimer

PDB DOI: 10.2210/pdb9yem/pdb

Classification: IMMUNE SYSTEM
Organism(s): Homo Sapiens , Human Immunodeficiency Virus 1

Deposited: 2025-09-24
Deposition Author(s): Gorman, J. , Kwong, P.D.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.81 Å

9yem
Literature

Cryo-em structure of triple-bound fdg antibody vrc49.01 in complex with hiv-1 env bg505 ds-sosip trimer

Gorman, J. , Kwong, P.D.

Primary Citation of Related Structures: 9YEM


Proteins
Molecule Chains Sequence Length Organism Sequence
BG505 SOSIP.664 gp41 A 153 Homo Sapiens , Human Immunodeficiency Virus 1 AVGIGAVFLGFLGAAGSTMGAASMTLTVQARNLLSGIVQQQSNLLRAPEAQQHLLKLTVWGIKQLQARVLAVERYLRDQQLLGIWGCSGKLICCTNVPWNSSWSNRNLSEIWDNMTWLQWDKEISNYTQIIYGLLEESQNQQEKNEQDLLALD
BG505 SOSIP.664 gp41 B 153 Homo Sapiens , Human Immunodeficiency Virus 1 AVGIGAVFLGFLGAAGSTMGAASMTLTVQARNLLSGIVQQQSNLLRAPEAQQHLLKLTVWGIKQLQARVLAVERYLRDQQLLGIWGCSGKLICCTNVPWNSSWSNRNLSEIWDNMTWLQWDKEISNYTQIIYGLLEESQNQQEKNEQDLLALD
BG505 SOSIP.664 gp41 I 153 Homo Sapiens , Human Immunodeficiency Virus 1 AVGIGAVFLGFLGAAGSTMGAASMTLTVQARNLLSGIVQQQSNLLRAPEAQQHLLKLTVWGIKQLQARVLAVERYLRDQQLLGIWGCSGKLICCTNVPWNSSWSNRNLSEIWDNMTWLQWDKEISNYTQIIYGLLEESQNQQEKNEQDLLALD
BG505 SOSIP.664 gp120 C 480 Homo Sapiens , Human Immunodeficiency Virus 1 AENLWVTVYYGVPVWKDAETTLFCASDAKAYETEKHNVWATHACVPTDPNPQEIHLENVTEEFNMWKNNMVEQMHTDIISLWDQSLKPCVKLTPLCVTLQCTNVTNNITDDMRGELKNCSFNMTTELRDKKQKVYSLFYRLDVVQINENQGNRSNNSNKEYRLINCNTSACTQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGTGPCPSVSTVQCTHGIKPVVSTQLLLNGSLAEEEVMIRSENITNNAKNILVQFNTPVQINCTRPNNNTRKSIRIGPGQAFYATGDIIGDIRQAHCNVSKATWNETLGKVVKQLRKHFGNNTIIRFANSSGGDLEVTTHSFNCGGEFFYCNTSGLFNSTWISNTSVQGSNSTGSNDSITLPCRIKQIINMWQRIGQCMYAPPIQGVIRCVSNITGLILTRDGGSTNSTTETFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTRCKRRVVGRRRRR
BG505 SOSIP.664 gp120 D 480 Homo Sapiens , Human Immunodeficiency Virus 1 AENLWVTVYYGVPVWKDAETTLFCASDAKAYETEKHNVWATHACVPTDPNPQEIHLENVTEEFNMWKNNMVEQMHTDIISLWDQSLKPCVKLTPLCVTLQCTNVTNNITDDMRGELKNCSFNMTTELRDKKQKVYSLFYRLDVVQINENQGNRSNNSNKEYRLINCNTSACTQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGTGPCPSVSTVQCTHGIKPVVSTQLLLNGSLAEEEVMIRSENITNNAKNILVQFNTPVQINCTRPNNNTRKSIRIGPGQAFYATGDIIGDIRQAHCNVSKATWNETLGKVVKQLRKHFGNNTIIRFANSSGGDLEVTTHSFNCGGEFFYCNTSGLFNSTWISNTSVQGSNSTGSNDSITLPCRIKQIINMWQRIGQCMYAPPIQGVIRCVSNITGLILTRDGGSTNSTTETFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTRCKRRVVGRRRRR
BG505 SOSIP.664 gp120 J 480 Homo Sapiens , Human Immunodeficiency Virus 1 AENLWVTVYYGVPVWKDAETTLFCASDAKAYETEKHNVWATHACVPTDPNPQEIHLENVTEEFNMWKNNMVEQMHTDIISLWDQSLKPCVKLTPLCVTLQCTNVTNNITDDMRGELKNCSFNMTTELRDKKQKVYSLFYRLDVVQINENQGNRSNNSNKEYRLINCNTSACTQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGTGPCPSVSTVQCTHGIKPVVSTQLLLNGSLAEEEVMIRSENITNNAKNILVQFNTPVQINCTRPNNNTRKSIRIGPGQAFYATGDIIGDIRQAHCNVSKATWNETLGKVVKQLRKHFGNNTIIRFANSSGGDLEVTTHSFNCGGEFFYCNTSGLFNSTWISNTSVQGSNSTGSNDSITLPCRIKQIINMWQRIGQCMYAPPIQGVIRCVSNITGLILTRDGGSTNSTTETFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTRCKRRVVGRRRRR
VRC49.01 Heavy K 125 Homo Sapiens , Human Immunodeficiency Virus 1 QVHLVESGGGLAQPGGSLRLSCTASGFVFTDYDMHWVRLTTGRRLQWVSSVGTRSDTFYAVSVKGRFSISRDNTRNSVSLQMNNLRPGDTGIYFCTRGPYCNCHACVVDDAFDLWGQGTTVIVSS
VRC49.01 Heavy M 125 Homo Sapiens , Human Immunodeficiency Virus 1 QVHLVESGGGLAQPGGSLRLSCTASGFVFTDYDMHWVRLTTGRRLQWVSSVGTRSDTFYAVSVKGRFSISRDNTRNSVSLQMNNLRPGDTGIYFCTRGPYCNCHACVVDDAFDLWGQGTTVIVSS
VRC49.01 Heavy E 125 Homo Sapiens , Human Immunodeficiency Virus 1 QVHLVESGGGLAQPGGSLRLSCTASGFVFTDYDMHWVRLTTGRRLQWVSSVGTRSDTFYAVSVKGRFSISRDNTRNSVSLQMNNLRPGDTGIYFCTRGPYCNCHACVVDDAFDLWGQGTTVIVSS
VRC49.01 Heavy G 125 Homo Sapiens , Human Immunodeficiency Virus 1 QVHLVESGGGLAQPGGSLRLSCTASGFVFTDYDMHWVRLTTGRRLQWVSSVGTRSDTFYAVSVKGRFSISRDNTRNSVSLQMNNLRPGDTGIYFCTRGPYCNCHACVVDDAFDLWGQGTTVIVSS
VRC49.01 Heavy O 125 Homo Sapiens , Human Immunodeficiency Virus 1 QVHLVESGGGLAQPGGSLRLSCTASGFVFTDYDMHWVRLTTGRRLQWVSSVGTRSDTFYAVSVKGRFSISRDNTRNSVSLQMNNLRPGDTGIYFCTRGPYCNCHACVVDDAFDLWGQGTTVIVSS
VRC49.01 Heavy Q 125 Homo Sapiens , Human Immunodeficiency Virus 1 QVHLVESGGGLAQPGGSLRLSCTASGFVFTDYDMHWVRLTTGRRLQWVSSVGTRSDTFYAVSVKGRFSISRDNTRNSVSLQMNNLRPGDTGIYFCTRGPYCNCHACVVDDAFDLWGQGTTVIVSS
VRC49.01 Light L 107 Homo Sapiens , Human Immunodeficiency Virus 1 DIQMTQSPSSISASLGDRVSITCRATQDIGNRLAWFQQRPGEIPKRLIYAGSTLQNGVPSRFGASGSGTQFTLTINSLQPEDSAIYFCLQHLNYPRTFGQGTTVQVK
VRC49.01 Light N 107 Homo Sapiens , Human Immunodeficiency Virus 1 DIQMTQSPSSISASLGDRVSITCRATQDIGNRLAWFQQRPGEIPKRLIYAGSTLQNGVPSRFGASGSGTQFTLTINSLQPEDSAIYFCLQHLNYPRTFGQGTTVQVK
VRC49.01 Light F 107 Homo Sapiens , Human Immunodeficiency Virus 1 DIQMTQSPSSISASLGDRVSITCRATQDIGNRLAWFQQRPGEIPKRLIYAGSTLQNGVPSRFGASGSGTQFTLTINSLQPEDSAIYFCLQHLNYPRTFGQGTTVQVK
VRC49.01 Light H 107 Homo Sapiens , Human Immunodeficiency Virus 1 DIQMTQSPSSISASLGDRVSITCRATQDIGNRLAWFQQRPGEIPKRLIYAGSTLQNGVPSRFGASGSGTQFTLTINSLQPEDSAIYFCLQHLNYPRTFGQGTTVQVK
VRC49.01 Light P 107 Homo Sapiens , Human Immunodeficiency Virus 1 DIQMTQSPSSISASLGDRVSITCRATQDIGNRLAWFQQRPGEIPKRLIYAGSTLQNGVPSRFGASGSGTQFTLTINSLQPEDSAIYFCLQHLNYPRTFGQGTTVQVK
VRC49.01 Light R 107 Homo Sapiens , Human Immunodeficiency Virus 1 DIQMTQSPSSISASLGDRVSITCRATQDIGNRLAWFQQRPGEIPKRLIYAGSTLQNGVPSRFGASGSGTQFTLTINSLQPEDSAIYFCLQHLNYPRTFGQGTTVQVK
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2025-09-24
Deposition Author(s): Gorman, J. , Kwong, P.D.