9YDW
Cryo-em structure of single-bound fdg antibody vrc49.01 in complex with hiv-1 env bg505 ds-sosip trimer
PDB DOI: 10.2210/pdb9ydw/pdb
Classification: VIRAL PROTEIN/IMMUNE SYSTEM Organism(s): Homo Sapiens , Human Immunodeficiency Virus 1
Deposited: 2025-09-23 Deposition Author(s): Gorman, J. , Kwong, P.D.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 3.34 Å
Cryo-em structure of single-bound fdg antibody vrc49.01 in complex with hiv-1 env bg505 ds-sosip trimer
Primary Citation of Related Structures: 9YDW
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| BG505 SOSIP.664 gp41 | A | 153 | Homo Sapiens , Human Immunodeficiency Virus 1 | AVGIGAVFLGFLGAAGSTMGAASMTLTVQARNLLSGIVQQQSNLLRAPEAQQHLLKLTVWGIKQLQARVLAVERYLRDQQLLGIWGCSGKLICCTNVPWNSSWSNRNLSEIWDNMTWLQWDKEISNYTQIIYGLLEESQNQQEKNEQDLLALD |
| BG505 SOSIP.664 gp41 | B | 153 | Homo Sapiens , Human Immunodeficiency Virus 1 | AVGIGAVFLGFLGAAGSTMGAASMTLTVQARNLLSGIVQQQSNLLRAPEAQQHLLKLTVWGIKQLQARVLAVERYLRDQQLLGIWGCSGKLICCTNVPWNSSWSNRNLSEIWDNMTWLQWDKEISNYTQIIYGLLEESQNQQEKNEQDLLALD |
| BG505 SOSIP.664 gp41 | I | 153 | Homo Sapiens , Human Immunodeficiency Virus 1 | AVGIGAVFLGFLGAAGSTMGAASMTLTVQARNLLSGIVQQQSNLLRAPEAQQHLLKLTVWGIKQLQARVLAVERYLRDQQLLGIWGCSGKLICCTNVPWNSSWSNRNLSEIWDNMTWLQWDKEISNYTQIIYGLLEESQNQQEKNEQDLLALD |
| HIV-1 BG505 DS-SOSIP gp120 | C | 481 | Homo Sapiens , Human Immunodeficiency Virus 1 | AENLWVTVYYGVPVWKDAETTLFCASDAKAYETEKHNVWATHACVPTDPNPQEIHLENVTEEFNMWKNNMVEQMHTDIISLWDQSLKPCVKLTPLCVTLQCTNVTNNITDDMRGELKNCSFNMTTELRDKKQKVYSLFYRLDVVQINENQGNRSNNSNKEYRLINCNTSACTQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGTGPCPSVSTVQCTHGIKPVVSTQLLLNGSLAEEEVMIRSENITNNAKNILVQFNTPVQINCTRPNNNTRKSIRIGPGQAFYATGDIIGDIRQAHCNVSKATWNETLGKVVKQLRKHFGNNTIIRFANSSGGDLEVTTHSFNCGGEFFYCNTSGLFNSTWISNTSVQGSNSTGSNDSITLPCRIKQIINMWQRIGQCMYAPPIQGVIRCVSNITGLILTRDGGSTNSTTETFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTRCKRRVVGRRRRRR |
| HIV-1 BG505 DS-SOSIP gp120 | D | 481 | Homo Sapiens , Human Immunodeficiency Virus 1 | AENLWVTVYYGVPVWKDAETTLFCASDAKAYETEKHNVWATHACVPTDPNPQEIHLENVTEEFNMWKNNMVEQMHTDIISLWDQSLKPCVKLTPLCVTLQCTNVTNNITDDMRGELKNCSFNMTTELRDKKQKVYSLFYRLDVVQINENQGNRSNNSNKEYRLINCNTSACTQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGTGPCPSVSTVQCTHGIKPVVSTQLLLNGSLAEEEVMIRSENITNNAKNILVQFNTPVQINCTRPNNNTRKSIRIGPGQAFYATGDIIGDIRQAHCNVSKATWNETLGKVVKQLRKHFGNNTIIRFANSSGGDLEVTTHSFNCGGEFFYCNTSGLFNSTWISNTSVQGSNSTGSNDSITLPCRIKQIINMWQRIGQCMYAPPIQGVIRCVSNITGLILTRDGGSTNSTTETFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTRCKRRVVGRRRRRR |
| HIV-1 BG505 DS-SOSIP gp120 | J | 481 | Homo Sapiens , Human Immunodeficiency Virus 1 | AENLWVTVYYGVPVWKDAETTLFCASDAKAYETEKHNVWATHACVPTDPNPQEIHLENVTEEFNMWKNNMVEQMHTDIISLWDQSLKPCVKLTPLCVTLQCTNVTNNITDDMRGELKNCSFNMTTELRDKKQKVYSLFYRLDVVQINENQGNRSNNSNKEYRLINCNTSACTQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGTGPCPSVSTVQCTHGIKPVVSTQLLLNGSLAEEEVMIRSENITNNAKNILVQFNTPVQINCTRPNNNTRKSIRIGPGQAFYATGDIIGDIRQAHCNVSKATWNETLGKVVKQLRKHFGNNTIIRFANSSGGDLEVTTHSFNCGGEFFYCNTSGLFNSTWISNTSVQGSNSTGSNDSITLPCRIKQIINMWQRIGQCMYAPPIQGVIRCVSNITGLILTRDGGSTNSTTETFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTRCKRRVVGRRRRRR |
| VRC49.01 Heavy | K | 125 | Homo Sapiens , Human Immunodeficiency Virus 1 | QVHLVESGGGLAQPGGSLRLSCTASGFVFTDYDMHWVRLTTGRRLQWVSSVGTRSDTFYAVSVKGRFSISRDNTRNSVSLQMNNLRPGDTGIYFCTRGPYCNCHACVVDDAFDLWGQGTTVIVSS |
| VRC49.01 Heavy | M | 125 | Homo Sapiens , Human Immunodeficiency Virus 1 | QVHLVESGGGLAQPGGSLRLSCTASGFVFTDYDMHWVRLTTGRRLQWVSSVGTRSDTFYAVSVKGRFSISRDNTRNSVSLQMNNLRPGDTGIYFCTRGPYCNCHACVVDDAFDLWGQGTTVIVSS |
| VRC49.01 Light | L | 107 | Homo Sapiens , Human Immunodeficiency Virus 1 | DIQMTQSPSSISASLGDRVSITCRATQDIGNRLAWFQQRPGEIPKRLIYAGSTLQNGVPSRFGASGSGTQFTLTINSLQPEDSAIYFCLQHLNYPRTFGQGTTVQVK |
| VRC49.01 Light | N | 107 | Homo Sapiens , Human Immunodeficiency Virus 1 | DIQMTQSPSSISASLGDRVSITCRATQDIGNRLAWFQQRPGEIPKRLIYAGSTLQNGVPSRFGASGSGTQFTLTINSLQPEDSAIYFCLQHLNYPRTFGQGTTVQVK |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2025-09-23 Deposition Author(s): Gorman, J. , Kwong, P.D.