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9YA9

Cryo-em structure of ternary complex bcl6-crbn-ddb1 with bms-986458 (local refined), a potent and selective bcl6 ligand directed degrader (ldd)

PDB DOI: 10.2210/pdb9ya9/pdb

Classification: LIGASE
Organism(s): Homo Sapiens

Deposited: 2025-09-15
Deposition Author(s): Fang, W. , Pagarigan, B. , Zhu, J.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.09 Å

Literature

Cryo-em structure of ternary complex bcl6-crbn-ddb1 with bms-986458 (local refined), a potent and selective bcl6 ligand directed degrader (ldd)

Fang, W. , Pagarigan, B. , Zhu, J.

Primary Citation of Related Structures: 9YA9


Proteins
Molecule Chains Sequence Length Organism Sequence
B-cell lymphoma 6 protein A 143 Homo Sapiens GSLDYKDDDDKENLYFQGADSCIQFTRHASDVLLNLNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKCNLSVINLDPEINPEGFCILLDFMYTSRLNLREGNIMAVMATAMYLQMEHVVDTCRKFIKASE
B-cell lymphoma 6 protein B 143 Homo Sapiens GSLDYKDDDDKENLYFQGADSCIQFTRHASDVLLNLNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKCNLSVINLDPEINPEGFCILLDFMYTSRLNLREGNIMAVMATAMYLQMEHVVDTCRKFIKASE
Protein cereblon C 467 Homo Sapiens MSYYHHHHHHDYDIPTTGLVPRGSMMAGEGDQQDAAHNMGNHLPLLPAESEEEDEMEVEDQDSKEAKKPNIINFDTSLPTSHTYLGADMEEFHGRTLHDDDSCQVIPVLPQVMMILIPGQTLPLQLFHPQEVSMVRNLIQKDRTFAVLAYSNVQEREAQFGTTAEIYAYREEQDFGIEIVKVKAIGRQRFKVLELRTQSDGIQQAKVQILPECVLPSTMSAVQLESLNKCQIFPSKPVSREDQCSYKWWQKYQKRKFHCANLTSWPRWLYSLYDAETLMDRIKKQLREWDENLKDDSLPSNPIDFSYRVAACLPIDDVLRIQLLKIGSAIQRLRCELDIMNKCTSLCCKQCQETEITTKNEIFSLSLCGPMAAYVNPHGYVHETLTVYKACNLNLIGRPSTEHSWFPGYAWTVAQCKICASHIGWKFTATKKDMSPQKFWGLTRSALLPTIPDTEDEISPDKVILCL
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2025-09-15
Deposition Author(s): Fang, W. , Pagarigan, B. , Zhu, J.