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FASTA Sequence PDB Format mmCIF Format
FASTA Sequence PDB Format PDB Format(gz) PDBx/mmCIF Format PDBx/mmCIF Format(gz) PDBML/XML Format Validation Full PDF Validation CIF

9XVC

Cryo-em helical structure of the ditp-kombc(h146n) complex with nad fragments

PDB DOI: 10.2210/pdb9xvc/pdb

Classification: IMMUNE SYSTEM
Organism(s): Escherichia Coli

Deposited: 2025-11-26
Deposition Author(s): Feng, H. , Luo, M. , Xie, W.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.2 Å

9xvc
Literature

Cryo-em helical structure of the ditp-kombc(h146n) complex with nad fragments

Feng, H. , Luo, M. , Xie, W.

Primary Citation of Related Structures: 9XVC


Proteins
Molecule Chains Sequence Length Organism Sequence
KomB, HAM-like protein, Non-canonical purine NTP pyrophosphatase C 184 Escherichia Coli MNIRFITRNRHKIKEINKILSGTGVVVLASEHSIDEIQTENVHALIKDKLLKAFKLVGRPVFVEHTGLYIESLNGFPGGLTQIFWDKLQADKFSQLLGTSENPRLVAKTIIGYCDSMKIYIFEGETQGTISPVPKGPRDFQWDCIFIPDGESETFAEMGDRKNEISMRKKAFDKFKEYLLEGGK
KomB, HAM-like protein, Non-canonical purine NTP pyrophosphatase D 184 Escherichia Coli MNIRFITRNRHKIKEINKILSGTGVVVLASEHSIDEIQTENVHALIKDKLLKAFKLVGRPVFVEHTGLYIESLNGFPGGLTQIFWDKLQADKFSQLLGTSENPRLVAKTIIGYCDSMKIYIFEGETQGTISPVPKGPRDFQWDCIFIPDGESETFAEMGDRKNEISMRKKAFDKFKEYLLEGGK
KomB, HAM-like protein, Non-canonical purine NTP pyrophosphatase A 184 Escherichia Coli MNIRFITRNRHKIKEINKILSGTGVVVLASEHSIDEIQTENVHALIKDKLLKAFKLVGRPVFVEHTGLYIESLNGFPGGLTQIFWDKLQADKFSQLLGTSENPRLVAKTIIGYCDSMKIYIFEGETQGTISPVPKGPRDFQWDCIFIPDGESETFAEMGDRKNEISMRKKAFDKFKEYLLEGGK
KomB, HAM-like protein, Non-canonical purine NTP pyrophosphatase B 184 Escherichia Coli MNIRFITRNRHKIKEINKILSGTGVVVLASEHSIDEIQTENVHALIKDKLLKAFKLVGRPVFVEHTGLYIESLNGFPGGLTQIFWDKLQADKFSQLLGTSENPRLVAKTIIGYCDSMKIYIFEGETQGTISPVPKGPRDFQWDCIFIPDGESETFAEMGDRKNEISMRKKAFDKFKEYLLEGGK
KomB, HAM-like protein, Non-canonical purine NTP pyrophosphatase K 184 Escherichia Coli MNIRFITRNRHKIKEINKILSGTGVVVLASEHSIDEIQTENVHALIKDKLLKAFKLVGRPVFVEHTGLYIESLNGFPGGLTQIFWDKLQADKFSQLLGTSENPRLVAKTIIGYCDSMKIYIFEGETQGTISPVPKGPRDFQWDCIFIPDGESETFAEMGDRKNEISMRKKAFDKFKEYLLEGGK
KomB, HAM-like protein, Non-canonical purine NTP pyrophosphatase L 184 Escherichia Coli MNIRFITRNRHKIKEINKILSGTGVVVLASEHSIDEIQTENVHALIKDKLLKAFKLVGRPVFVEHTGLYIESLNGFPGGLTQIFWDKLQADKFSQLLGTSENPRLVAKTIIGYCDSMKIYIFEGETQGTISPVPKGPRDFQWDCIFIPDGESETFAEMGDRKNEISMRKKAFDKFKEYLLEGGK
KomB, HAM-like protein, Non-canonical purine NTP pyrophosphatase I 184 Escherichia Coli MNIRFITRNRHKIKEINKILSGTGVVVLASEHSIDEIQTENVHALIKDKLLKAFKLVGRPVFVEHTGLYIESLNGFPGGLTQIFWDKLQADKFSQLLGTSENPRLVAKTIIGYCDSMKIYIFEGETQGTISPVPKGPRDFQWDCIFIPDGESETFAEMGDRKNEISMRKKAFDKFKEYLLEGGK
KomB, HAM-like protein, Non-canonical purine NTP pyrophosphatase J 184 Escherichia Coli MNIRFITRNRHKIKEINKILSGTGVVVLASEHSIDEIQTENVHALIKDKLLKAFKLVGRPVFVEHTGLYIESLNGFPGGLTQIFWDKLQADKFSQLLGTSENPRLVAKTIIGYCDSMKIYIFEGETQGTISPVPKGPRDFQWDCIFIPDGESETFAEMGDRKNEISMRKKAFDKFKEYLLEGGK
KomC(H146N), a SIR2-domain NADase H 264 Escherichia Coli MEQLLADYKKGNVILFVGAGVSMNLGLPSWSQLVDHIATELGYDPDIYRTFGSALELAEYYKLKKGKIGPLRSWMDRMWHSSDIDINKSKVHEYIAKANFPIIYTTNYDRWIETALSNYGKEYIKISSVSDIAKIDNNKTQIIKFNGDFDDDSSIVLDETSYFQRLEFETPLDIKFRSDVLGKSVLFIGYSLSDINIRLLFYKLSKLWKEQKLEEAQPKSYIFLPRPNPIQEEILEQWRIGMISSENDNPGESLEEFLKNFVLV
KomC(H146N), a SIR2-domain NADase G 264 Escherichia Coli MEQLLADYKKGNVILFVGAGVSMNLGLPSWSQLVDHIATELGYDPDIYRTFGSALELAEYYKLKKGKIGPLRSWMDRMWHSSDIDINKSKVHEYIAKANFPIIYTTNYDRWIETALSNYGKEYIKISSVSDIAKIDNNKTQIIKFNGDFDDDSSIVLDETSYFQRLEFETPLDIKFRSDVLGKSVLFIGYSLSDINIRLLFYKLSKLWKEQKLEEAQPKSYIFLPRPNPIQEEILEQWRIGMISSENDNPGESLEEFLKNFVLV
KomC(H146N), a SIR2-domain NADase F 264 Escherichia Coli MEQLLADYKKGNVILFVGAGVSMNLGLPSWSQLVDHIATELGYDPDIYRTFGSALELAEYYKLKKGKIGPLRSWMDRMWHSSDIDINKSKVHEYIAKANFPIIYTTNYDRWIETALSNYGKEYIKISSVSDIAKIDNNKTQIIKFNGDFDDDSSIVLDETSYFQRLEFETPLDIKFRSDVLGKSVLFIGYSLSDINIRLLFYKLSKLWKEQKLEEAQPKSYIFLPRPNPIQEEILEQWRIGMISSENDNPGESLEEFLKNFVLV
KomC(H146N), a SIR2-domain NADase E 264 Escherichia Coli MEQLLADYKKGNVILFVGAGVSMNLGLPSWSQLVDHIATELGYDPDIYRTFGSALELAEYYKLKKGKIGPLRSWMDRMWHSSDIDINKSKVHEYIAKANFPIIYTTNYDRWIETALSNYGKEYIKISSVSDIAKIDNNKTQIIKFNGDFDDDSSIVLDETSYFQRLEFETPLDIKFRSDVLGKSVLFIGYSLSDINIRLLFYKLSKLWKEQKLEEAQPKSYIFLPRPNPIQEEILEQWRIGMISSENDNPGESLEEFLKNFVLV
KomC(H146N), a SIR2-domain NADase P 264 Escherichia Coli MEQLLADYKKGNVILFVGAGVSMNLGLPSWSQLVDHIATELGYDPDIYRTFGSALELAEYYKLKKGKIGPLRSWMDRMWHSSDIDINKSKVHEYIAKANFPIIYTTNYDRWIETALSNYGKEYIKISSVSDIAKIDNNKTQIIKFNGDFDDDSSIVLDETSYFQRLEFETPLDIKFRSDVLGKSVLFIGYSLSDINIRLLFYKLSKLWKEQKLEEAQPKSYIFLPRPNPIQEEILEQWRIGMISSENDNPGESLEEFLKNFVLV
KomC(H146N), a SIR2-domain NADase O 264 Escherichia Coli MEQLLADYKKGNVILFVGAGVSMNLGLPSWSQLVDHIATELGYDPDIYRTFGSALELAEYYKLKKGKIGPLRSWMDRMWHSSDIDINKSKVHEYIAKANFPIIYTTNYDRWIETALSNYGKEYIKISSVSDIAKIDNNKTQIIKFNGDFDDDSSIVLDETSYFQRLEFETPLDIKFRSDVLGKSVLFIGYSLSDINIRLLFYKLSKLWKEQKLEEAQPKSYIFLPRPNPIQEEILEQWRIGMISSENDNPGESLEEFLKNFVLV
KomC(H146N), a SIR2-domain NADase N 264 Escherichia Coli MEQLLADYKKGNVILFVGAGVSMNLGLPSWSQLVDHIATELGYDPDIYRTFGSALELAEYYKLKKGKIGPLRSWMDRMWHSSDIDINKSKVHEYIAKANFPIIYTTNYDRWIETALSNYGKEYIKISSVSDIAKIDNNKTQIIKFNGDFDDDSSIVLDETSYFQRLEFETPLDIKFRSDVLGKSVLFIGYSLSDINIRLLFYKLSKLWKEQKLEEAQPKSYIFLPRPNPIQEEILEQWRIGMISSENDNPGESLEEFLKNFVLV
KomC(H146N), a SIR2-domain NADase M 264 Escherichia Coli MEQLLADYKKGNVILFVGAGVSMNLGLPSWSQLVDHIATELGYDPDIYRTFGSALELAEYYKLKKGKIGPLRSWMDRMWHSSDIDINKSKVHEYIAKANFPIIYTTNYDRWIETALSNYGKEYIKISSVSDIAKIDNNKTQIIKFNGDFDDDSSIVLDETSYFQRLEFETPLDIKFRSDVLGKSVLFIGYSLSDINIRLLFYKLSKLWKEQKLEEAQPKSYIFLPRPNPIQEEILEQWRIGMISSENDNPGESLEEFLKNFVLV
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2025-11-26
Deposition Author(s): Feng, H. , Luo, M. , Xie, W.