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9XAB
Cryo-em structure of the pre-40s ribosome (enp1-rrp12 wt) from chaetomium thermophilum, state tsr1-3
PDB DOI: 10.2210/pdb9xab/pdb
Classification: RIBOSOME Organism(s): Thermochaetoides Thermophila
Deposited: 2025-10-22 Deposition Author(s): Beckmann, R. , Cheng, J. , Fischer, P. , Hong, X. , Hurt, E. , Lau, B. , Li, Y. , Yuan, R. , Zhu, J.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 3.2 Å
Cryo-em structure of the pre-40s ribosome (enp1-rrp12 wt) from chaetomium thermophilum, state tsr1-3
Beckmann, R. , Cheng, J. , Fischer, P. , Hong, X. , Hurt, E. , Lau, B. , Li, Y. , Yuan, R. , Zhu, J.
Primary Citation of Related Structures: 9XAB
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| Small ribosomal subunit protein uS2 | D | 285 | Thermochaetoides Thermophila | MAPANLPSIFNPTSADIEQLLAAQCHIGSKNLNVHMQPYVWKTRADGVNIINLGKTWEKLVLAARIIVAIDNPSDVCVISSRPFGQRAVLKFAAHTGAQAIAGRFTPGSFTNYITRSFKEPRLIVVTDPRTDAQAIKEASYVNIPVIALCDTDSPLEYVDVAIPTNNKGRHSVGLIWWMLAREVLRLRGTIYNRETPWDVMPDLYFYRDPEAEAEEKIEEKELAVEEEVAAVDTGFAGAGDWEAAPGGFPAATEWSEAQAGSWEAGAAATSEWAAEPTKDASAGW |
| 40S ribosomal protein S13-like protein | Q | 151 | Thermochaetoides Thermophila | MGRLHSKGKGISASAIPYSRNPPAWLKTTPEQVVEQICKLARKGATPSQIGVILRDSHGIAQVKVVTGNKILRILKSNGLAPDIPEDLYFLIKKAVAVRKHLERNRKDKDSKFRLILIESRIHRLARYYKTVGVLPPTWKYESSTASTLVA |
| 40S ribosomal protein S14-like protein | R | 150 | Thermochaetoides Thermophila | MPPKKTTRPAQENISLGPQVREGELVFGVARIFASFNDTFVHVTDLSGRETICRVTGGMKVKADRDESSPYAAMLAAQDVAARCKELGITALHIKIRATGGNGTKTPGPGAQSALRALARSGMKIGRIEDVTPTPSDSTRRKGGRRGRRL |
| 40S ribosomal protein S17-like protein | U | 143 | Thermochaetoides Thermophila | MGRVRTKTVKKSAKVIIEKYYPRLTLDFETNKRVCDEIAVISSKRLRNKIAGYTTHLMKRIQRGPVRGISFKLQEEERERKDQYVPEVSALDFHQNSETGMLDIDQETKDLLKHLGFDSIPVNVIPVTQSQPVERGRRYGRRD |
| 40S ribosomal protein S21-like protein | Y | 98 | Thermochaetoides Thermophila | MENDRGEIVDLYVPRKCSATGRIIKAKDHGSCQITIAKVDENGRAIQGENIIYAFSGFVRAMGESDDALNRLAQRDGLLKNVWSAQRCAFYDPTLLRI |
| 40S ribosomal protein S22-like protein | Z | 130 | Thermochaetoides Thermophila | MVRTSVLHDALNSINNAEKMGKRQVMIRPSSKVIVKFLQVMQRHGYIGEFEEVDNHRSGKIVVQLNGRLNKCGVISPRYNVRLAELEKWVTKLLPARQFGYVILTTSAGIMDHEEARRKHVAGKIIGFFY |
| Small ribosomal subunit protein eS24 | B | 136 | Thermochaetoides Thermophila | MADTDSPVTLRTRKFIRNPLLSRKQMVVDILHPGRPNISKDELREKLATMYKAQKDQVSVFGLRTQYGGGKTTGFALIYDSPEALKKFEPRYRLVRAGLAAKVEKASRQQRKQRKNRLKTLRGTAKVKGAKAKKEK |
| Small ribosomal subunit protein eS1 | E | 255 | Thermochaetoides Thermophila | MAVGKNKRLSKGKKGLKKKVQDPFTRKDWYNIKAPAPFAVRDVGKTLVNRTTGLKNANDALKGRIFEVCLADLQKDEDHAFRKIKLRVDEVQGKNCLTNFHGLDFTTDKLRSLVRKWQTLIEANVTVTTTDHYLLRLFAIAFTKRRPNQIKKTTYAQSSQIRAIRRKMVEIIQREAASCTLHQLVSKLIPEVIGREIEKATQGIYPLQNVHIRKVKLLKQPKFDLGALMALHGESSEEAGQKVEREFREQVLESV |
| 40S ribosomal protein S4 | H | 264 | Thermochaetoides Thermophila | MARGPKKHQKRLSAPSHWLLDKLSGAYAPRPSTGPHKLRDCMPLIVFVRNRLKYALNYRETKAIMMQRLVKVDGKVRTDITYPAGFMDVITIEKTGENFRLIYDTKGRFTVHRITDEEAKYKLGKVKRVQLGRGGVPFLVTHDARTIRYPDPLIKVNDTVKIDLETGKITDFIKFDTGALAMITGGRNMGRVGVITHRERHDGGFGIVHLKDALDNTFATRESNVFVIGSEKPWISLPKGKGVKLTIAEERDQRRARALAAAGH |
| Methyltransferase-like protein | 1 | 282 | Thermochaetoides Thermophila | MSRPEDTLAADVHYNDAEARKYTTSSRIQNIQAAMTRRALELLNLKSPSLILDVGCGSGLSGEILSSVPPEEGGPHVWVGMDISASMLDVALQRDVEGDLLLSDIGQGVPFRPGTFDAAISISAIQWLCNADTSETSPAGRLTRFFNGLYAALKRGGMAVCQFYPKNDVQKQMITSAAIKAGFGAGLLEDDPGTKNVKVYLVLTVGSTAVQAKGGDITGVVEGMDNVEVLDNRKKAKPKSGKGEIKKGSKAWIIKKKEQMERKGKIVKRTSKYTGRSRGPKF |
| Bms1-type G domain-containing protein | 2 | 830 | Thermochaetoides Thermophila | MPGPVSNGQHHHRPTTKTKHKPFKSRHATKRALRDAAKGRVPNEKGQRKTPHQQVMSKLDRRNQAKQRLLEKSREHAKEVSVFNGRDGAPRNVAVIPLCPDTDAVAAIKALNDSIDIEADVRDGVFRVPVDRFKQKLQYIALNRDLTACLDACSVADFIVLVLSAHVEVDELGELILRSVESQGMSTLFTVVQGLNRIEPQKQRLSVVASLKSYITHFHPEQEKIYNLDNRQECSNLMRSLCSTTPKGVRWRDERSWMLIEDVKFGASADEPSIVTGVVRGKGLKADRLVQIGDWGTFQVEKITAAPLTVRKRKGDDTAMEDVEQILDTPTEDRDGLEDLAPEEAVMRDDDEDEMMDAASTVTTSKKGVLLDDHRYYSEDEEEEEERKLPKRVPKGTSKYQAAWFLDDDDISDSGTDLEDLDMEDAQSEASEESARPEDGIEGLAGADDAMTEAGPSEYPQSVAFEEPDEEEDMRALEAYRKLKRTEAEDDREFPDEIELHPKVLARERLAKYRGLKSMRTSPWVEEEDRAFEPEEWQRLLRIPDYRASRIRAAREALVGGVAPGTRVNVYVKGLPGRARESYKPGQPLPLVSLLRHEHKRTAMNILINLPSDFPASIKSKSEMIVQYGARRFVINPLFSQPGSTPNDVHKYCRYLHPGQSAVATFMGPVTWGSVPALFFMRDPPTSNDPEAEEQTSASTLPLTLVATGTTLPPSTKRVIAKRAILTGHPYHIHKKIVTVRYMFFNREDVEWFKALPLWTKRGRSGYIKEPLGTHGYFKATFDGRINPQDTIGVSLYKRVWPRNARPLEGALLDEKEVAAKKGEDTEMVE |
| Pre-rRNA-processing protein PNO1 | 3 | 259 | Thermochaetoides Thermophila | MPAPTALKQPPPAPEQQAAPAITNENEDELLIDIQQAAATLTDPNAAEPPEETMENEMAVDEEGRPRFAPGKNIDPIRRIETRKIPIPPHRMSALKANWTKYPPLVDHCKLQVRMNIKEKRVELRSSKYTVSNEALQMGADFVSAFAMGFDIDDAIALLRLDSLYIQSFDIKDVRQTLGPDALSRAIGRIAGKDGKTKFAIENATKTRIVLAGSKVHILGAFENIGMARESIVSLVLGAQPGKVYNNLRIIASRMKERW |
| Small ribosomal subunit protein uS5 | F | 263 | Thermochaetoides Thermophila | MADRGTGARGGGFASRGGADRGRGRGGPRRGRRGGGKGDEKEWQPVTKLGRLVKAGKIKSMEEIYLHSLPIKEYQIVDYFLPKLKDEVMKIKPVQKQTRAGQRTRFKAIVLIGDSDGHVGLGIKTSKEVATAIRAAIIIAKLSVIPVRRGYWGANLGRPHSLPVKQSGKCGSVTVRLIPAPRGTSLVASPAVKRLLQLAGIEDAYTSSSGSTKTLENTLKATFAAVANTYGFLTPNLWKETKLIRSPLEEYADTLRDGKRYAH |
| 40S ribosomal protein S6 | J | 239 | Thermochaetoides Thermophila | MKLNISHPANGSQKLIEVEDERKLRHFYDKRMGAEVAGDPLGPEWKGYILRITGGNDKQGFPMKQGVIAPNRVRLLLSEGHSCYRPRRDGERKRKSVRGCIVGPDLSVLALSIVKQGEQDIPGLTDVVHPKRLGPKRATKIRRFFSLSKDDDVRKYVIRREVQPKGEGKKPYTKAPRIQRLVTPQRLQHKRHRIALKRRQQEKVKEEAAEYAQILAKRVAEAKAQKADLRKRRASSLHK |
| 40S ribosomal protein S7 | K | 203 | Thermochaetoides Thermophila | MSAPSLNKIAANSPSRQNPSDLERAIAGALYDLETNTADLKAALRPLQFVSAREIEVGHGKKAIVIFVPVPALQGFHRVQQRLTRELEKKFSDRHVLILAARRILPKPKRSARSRNTLKQKRPRSRTLTAVHDAILTDLVYPVEIVGKRLRTKEDGSKVLKVILDEKERGGVDYRLDTYSEVYRRLTGRNVTFEFPQTTITDY |
| 40S ribosomal protein S8 | L | 202 | Thermochaetoides Thermophila | MGISRDSRHKRSHTGAKRAFYRKKRAFELGRQPANTRIGPKRIHIVRTRGGNHKYRALRLDSGNFAWGSEGCTRKTRIIGVVYHPSNNELVRTNTLTKSAVVQIDAAPFRQWYEAHYGQPLGRRRQQKQGQVVEEVKKSKSVEKKQAARFAAHGKVDPALEKQFEAGRLYAIISSRPGQSGRADGYILEGEELAFYQRKLHK |
| 40S ribosomal protein s9-like protein | M | 190 | Thermochaetoides Thermophila | MAPRKYSKTYKVPRRPYEAARLDSELKLVGEYGLRNKREVWRVLLTLSKIRRAARILLTLDEKDPKRLFEGNALIRRLVRIGVLDESRMKLDYVLALKAEDFLERRLQTLVYKLGLAKSIHHARVLIRQRHIRVGKQIVNVPSFMVRLDSQKHIDFALTSPFGGGRPGRVRRKKAKAAEGGEGGEEEEEE |
| 40S ribosomal protein S11-like protein | O | 161 | Thermochaetoides Thermophila | MATELTVQSERAFLKQPHIFLNSKVKVKSTRPGKGGRRWYKDVGLGFKTPKTAIEGHYIDKKCPFTGMVSIRGRILTGRVVSTKMHRTIIIRREYLHYIPKYNRYEKRHKNLAAHVSPAFRVEEGDMVVVGQCRPLSKTVRFNVLRVLPRTGKSVKKFQKF |
| Nucleic Acids / Hybrid | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| 18S rRNA | a | 1796 | NA | UACCUGGUUGAUUCUGCCAGUAGUCAUAUGCUUGUCUCAAAGAUUAAGCCAUGCAUGUCUAAGUAUAAGCAAUUAUACAGCGAAACUGCGAAUGGCUCAUUAAAUCAGUUAUCGUUUAUUUGAUAGUACCUUACUACAUGGAUAACCGUGGUAAUUCUAGAGCUAAUACAUGCUGAAAAUCCCGACUUCGGAAGGGAUGUAUUUAUUAGAUUAAAAACCAAUGCCCUUCGGGGCUUUCUGGUGAUUCAUAAUAACUUCUCGAAUCGCACGGCCUUGCGCCGGCGAUGGUUCAUUCAAAUUUCUGCCCUAUCAACUUUCGACGGCUGGGUAUUGGCCAGCCGUGGUGACAACGGGUAACGGAGGGUUAGGGCUCGACCCCGGAGAAGGAGCCUGAGAAACGGCUACUACAUCCAAGGAAGGCAGCAGGCGCGCAAAUUACCCAAUCCCGACACGGGGAGGUAGUGACAAUAAAUACUGAUACAGGGCUCUUUCGGGUCUUGUAAUUGGAAUGAGUACAAUUUAAAUCCCUUAACGAGGAACAAUUGGAGGGCAAGUCUGGUGCCAGCAGCCGCGGUAAUUCCAGCUCCAAUAGCGUAUAUUAAAGUUGUUGAGGUUAAAAAGCUCGUAGUUGAACCUUGGGCCUAGCCCGCCGGUCCGCCUCACCGCGUGCACUGGCUGGGCUGGGCCUUUCCUUCUGGAGAACCGCAUGCCCUUCACUGGGUGUGUCGGGGAACCAGGACUUUUACUCUGAACAAAUUAGAUCGCUUAAAGAAGGCCUAUGCUUGAAUACAUUAGCAUGGAAUAAUAGAAUAGGACGUGUGGUUCUAUUUUGUUGGUUUCUAGGACCGCCGUAAUGAUUAAUAGGGACAGUCGGGGGCGUCAGUAUUCAAUUGUCAGAGGUGAAAUUCUUGGAUUUAUUGAAGACUAACAACUGCGAAAGCAUUCGCCAAGGAUGUUUUCAUUAAUCAGGAACGAAAGUUAGGGGAUCGAAGACGAUCAGAUACCGUCGUAGUCUUAACCAUAAACUAUGCCGAUUAGGGAUCGGACGGCGUUUAUUUUUGACCCGUUCGGCACCUUACGAUAAAUCAAAAUGUUUGGGCUCCUGGGGGAGUAUGGUCGCAAGGCUGAAACUUAAAGAAAUUGACGGAAGGGCACCACCAGGGGUGGAGCCUGCGGCUUAAUUUGACUCAACACGGGGAAACUCACCAGGUCCAGACACGAUGAGGAUUGACAGAUUGAGAGCUCUUUCUUGAUUUCGUGGGUGGUGGUGCAUGGCCGUUCUUAGUUGGUGGAGUGAUUUGUCUGCUUAAUUGCGAUAACGAACGAGACCUUAACCUGCUAAAUAGCCCGUAUUGCCUUGGCAGUACGCCGGCUUCUUAGAGGGACUAUCGGCUCAAGCCGAUGGAAGUUUGAGGCAAUAACAGGUCUGUGAUGCCCUUAGAUGUUCUGGGCCGCACGCGCGCUACACUGACAGAGCCAGCGAGUACUCCCUUGGCCGAGAGGCCCGGGUAAUCUUGUUAAACUCUGUCGUGCUGGGGAUAGAGCAUUGCAAUUAUUGCUCUUCAACGAGGAAUCCCUAGUAAGCGCAAGUCAUCAGCUUGCGUUGAUUACGUCCCUGCCCUUUGUACACACCGCCCGUCGCUACUACCGAUUGAACGGCUCAGUGAGGCUUUCGGACUGGCCCAGAGAGGUCGGCAACGACCACUCAGGGCCGGAAAGUUAUCCAAACUCGGUCGUUUAGAGGAAGUAAAAGUCGUAACAAGGUCUCCGUAGGUGAACCUGCGGAGGGAUCAUUA |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2025-10-22 Deposition Author(s): Beckmann, R. , Cheng, J. , Fischer, P. , Hong, X. , Hurt, E. , Lau, B. , Li, Y. , Yuan, R. , Zhu, J.