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9X9Z

Structure of the omicron ba.2.86 variant spike n-terminal domain(ntd)in complex with the antibody fab fragment, c1717

PDB DOI: 10.2210/pdb9x9z/pdb

Classification: IMMUNE SYSTEM
Organism(s): Homo Sapiens , Severe Acute Respiratory Syndrome Coronavirus 2

Deposited: 2025-10-22
Deposition Author(s): Gao, G.F. , Zhou, J.J.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.55 Å

9x9z
Literature

Structure of the omicron ba.2.86 variant spike n-terminal domain(ntd)in complex with the antibody fab fragment, c1717

Gao, G.F. , Zhou, J.J.

Primary Citation of Related Structures: 9X9Z


Proteins
Molecule Chains Sequence Length Organism Sequence
Spike protein S1 A 295 Homo Sapiens , Severe Acute Respiratory Syndrome Coronavirus 2 QCVMPLFNLITTTQSYTNSFTRGVYYPDKVFRSSVLHLTQDLFLPFFSNVTWFHAISGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIVNNATNVFIKVCEFQFCNDPFLDVYHKNNKSWMESESGVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPIIGRDFPQGFSALEPLVDLPIGINITRFQTLLALNRSYLTPGDSSSGWTAGAADYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSHHHHHH
C1717 heavy chain H 233 Homo Sapiens , Severe Acute Respiratory Syndrome Coronavirus 2 QVQLVQSGAEVKKPGSSVKVSCKTSGGTFNSFAINWVRQAPGQGPEWMGRVIPVLEIANYAQKFQGRITITADKSTSTAYMELSSLTSEDTAIYYCARHHIAVAQPYFDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSCDKTHHHHHH
C1717 light chain L 216 Homo Sapiens , Severe Acute Respiratory Syndrome Coronavirus 2 QSVLTQPPSASGTPGQRVTISCSGSSSNIGSNTVNWYQHLPGTAPKLLMSSDDQRPSGVPARFSGSKSGTSASLAISGLRSEDEADYYCASWDDRLNGVVFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2025-10-22
Deposition Author(s): Gao, G.F. , Zhou, J.J.