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FASTA Sequence PDB Format mmCIF Format
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9X1L

The cryo-em structure of hera-nura complex with amppnp from thermococcus kodakarensis

PDB DOI: 10.2210/pdb9x1l/pdb

Classification: TRANSLOCASE
Organism(s): Thermococcus Kodakarensis

Deposited: 2025-10-02
Deposition Author(s): Numata, T. , Uda, K.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.8 Å

9x1l
Literature

The cryo-em structure of hera-nura complex with amppnp from thermococcus kodakarensis

Numata, T. , Uda, K.

Primary Citation of Related Structures: 9X1L


Proteins
Molecule Chains Sequence Length Organism Sequence
DNA helicase A 592 Thermococcus Kodakarensis MRIAEDINKPVGIVTGEATVSSFQFYAHPDTDLKFGDFVVARLCKEAKDQNCRWGENEEGVEWVIGTIRGLKNINWLLSEGKSTYTSLELDIREYGESIGENEALIVTVHVLGKVQLNGEKAEVVPTRVPVPNGNRVYLASSDLLRAIYYGGNGYIELGRLIIREDVPVYLNVNELVSRHFAILAVTGAGKSNTVSVMLWKLVEELGGTVIVLDPHGDYTKLSLPGTGREYVNLIEAKIRPEAMDGEELADLMEIQSNASIQRSYLLRAWDTVLHENQGIGGREAVKLVHDLLQRWASEGGGTYWDPHAGQYRDLGEIKSAEKETIMRLTMKVSRFLRNYGHLLSSEDIVALIEPGKVNVIDLGPLDEGQMKLVVAKFLEKVFETRMDYEKARKRLDYLRTAYSSNISAVSDEINELEEFLRGVEKNYPALAEPVMVIVEEAHIFAPHGEKGGAVRILGRIAREGRKFGVGLGLVSQRPSRLSEDVLSQTNTKIIMRIVNPNDQQYVVRASEQVSGELMSDIAGLGKGEAVIVGQAISLPALVKIYNFKALGGNYGGEDIGAVERWLERKRRELEEKEKEEMYEEEGIEVDF
DNA helicase B 592 Thermococcus Kodakarensis MRIAEDINKPVGIVTGEATVSSFQFYAHPDTDLKFGDFVVARLCKEAKDQNCRWGENEEGVEWVIGTIRGLKNINWLLSEGKSTYTSLELDIREYGESIGENEALIVTVHVLGKVQLNGEKAEVVPTRVPVPNGNRVYLASSDLLRAIYYGGNGYIELGRLIIREDVPVYLNVNELVSRHFAILAVTGAGKSNTVSVMLWKLVEELGGTVIVLDPHGDYTKLSLPGTGREYVNLIEAKIRPEAMDGEELADLMEIQSNASIQRSYLLRAWDTVLHENQGIGGREAVKLVHDLLQRWASEGGGTYWDPHAGQYRDLGEIKSAEKETIMRLTMKVSRFLRNYGHLLSSEDIVALIEPGKVNVIDLGPLDEGQMKLVVAKFLEKVFETRMDYEKARKRLDYLRTAYSSNISAVSDEINELEEFLRGVEKNYPALAEPVMVIVEEAHIFAPHGEKGGAVRILGRIAREGRKFGVGLGLVSQRPSRLSEDVLSQTNTKIIMRIVNPNDQQYVVRASEQVSGELMSDIAGLGKGEAVIVGQAISLPALVKIYNFKALGGNYGGEDIGAVERWLERKRRELEEKEKEEMYEEEGIEVDF
DNA helicase C 592 Thermococcus Kodakarensis MRIAEDINKPVGIVTGEATVSSFQFYAHPDTDLKFGDFVVARLCKEAKDQNCRWGENEEGVEWVIGTIRGLKNINWLLSEGKSTYTSLELDIREYGESIGENEALIVTVHVLGKVQLNGEKAEVVPTRVPVPNGNRVYLASSDLLRAIYYGGNGYIELGRLIIREDVPVYLNVNELVSRHFAILAVTGAGKSNTVSVMLWKLVEELGGTVIVLDPHGDYTKLSLPGTGREYVNLIEAKIRPEAMDGEELADLMEIQSNASIQRSYLLRAWDTVLHENQGIGGREAVKLVHDLLQRWASEGGGTYWDPHAGQYRDLGEIKSAEKETIMRLTMKVSRFLRNYGHLLSSEDIVALIEPGKVNVIDLGPLDEGQMKLVVAKFLEKVFETRMDYEKARKRLDYLRTAYSSNISAVSDEINELEEFLRGVEKNYPALAEPVMVIVEEAHIFAPHGEKGGAVRILGRIAREGRKFGVGLGLVSQRPSRLSEDVLSQTNTKIIMRIVNPNDQQYVVRASEQVSGELMSDIAGLGKGEAVIVGQAISLPALVKIYNFKALGGNYGGEDIGAVERWLERKRRELEEKEKEEMYEEEGIEVDF
DNA helicase D 592 Thermococcus Kodakarensis MRIAEDINKPVGIVTGEATVSSFQFYAHPDTDLKFGDFVVARLCKEAKDQNCRWGENEEGVEWVIGTIRGLKNINWLLSEGKSTYTSLELDIREYGESIGENEALIVTVHVLGKVQLNGEKAEVVPTRVPVPNGNRVYLASSDLLRAIYYGGNGYIELGRLIIREDVPVYLNVNELVSRHFAILAVTGAGKSNTVSVMLWKLVEELGGTVIVLDPHGDYTKLSLPGTGREYVNLIEAKIRPEAMDGEELADLMEIQSNASIQRSYLLRAWDTVLHENQGIGGREAVKLVHDLLQRWASEGGGTYWDPHAGQYRDLGEIKSAEKETIMRLTMKVSRFLRNYGHLLSSEDIVALIEPGKVNVIDLGPLDEGQMKLVVAKFLEKVFETRMDYEKARKRLDYLRTAYSSNISAVSDEINELEEFLRGVEKNYPALAEPVMVIVEEAHIFAPHGEKGGAVRILGRIAREGRKFGVGLGLVSQRPSRLSEDVLSQTNTKIIMRIVNPNDQQYVVRASEQVSGELMSDIAGLGKGEAVIVGQAISLPALVKIYNFKALGGNYGGEDIGAVERWLERKRRELEEKEKEEMYEEEGIEVDF
DNA helicase E 592 Thermococcus Kodakarensis MRIAEDINKPVGIVTGEATVSSFQFYAHPDTDLKFGDFVVARLCKEAKDQNCRWGENEEGVEWVIGTIRGLKNINWLLSEGKSTYTSLELDIREYGESIGENEALIVTVHVLGKVQLNGEKAEVVPTRVPVPNGNRVYLASSDLLRAIYYGGNGYIELGRLIIREDVPVYLNVNELVSRHFAILAVTGAGKSNTVSVMLWKLVEELGGTVIVLDPHGDYTKLSLPGTGREYVNLIEAKIRPEAMDGEELADLMEIQSNASIQRSYLLRAWDTVLHENQGIGGREAVKLVHDLLQRWASEGGGTYWDPHAGQYRDLGEIKSAEKETIMRLTMKVSRFLRNYGHLLSSEDIVALIEPGKVNVIDLGPLDEGQMKLVVAKFLEKVFETRMDYEKARKRLDYLRTAYSSNISAVSDEINELEEFLRGVEKNYPALAEPVMVIVEEAHIFAPHGEKGGAVRILGRIAREGRKFGVGLGLVSQRPSRLSEDVLSQTNTKIIMRIVNPNDQQYVVRASEQVSGELMSDIAGLGKGEAVIVGQAISLPALVKIYNFKALGGNYGGEDIGAVERWLERKRRELEEKEKEEMYEEEGIEVDF
DNA helicase F 592 Thermococcus Kodakarensis MRIAEDINKPVGIVTGEATVSSFQFYAHPDTDLKFGDFVVARLCKEAKDQNCRWGENEEGVEWVIGTIRGLKNINWLLSEGKSTYTSLELDIREYGESIGENEALIVTVHVLGKVQLNGEKAEVVPTRVPVPNGNRVYLASSDLLRAIYYGGNGYIELGRLIIREDVPVYLNVNELVSRHFAILAVTGAGKSNTVSVMLWKLVEELGGTVIVLDPHGDYTKLSLPGTGREYVNLIEAKIRPEAMDGEELADLMEIQSNASIQRSYLLRAWDTVLHENQGIGGREAVKLVHDLLQRWASEGGGTYWDPHAGQYRDLGEIKSAEKETIMRLTMKVSRFLRNYGHLLSSEDIVALIEPGKVNVIDLGPLDEGQMKLVVAKFLEKVFETRMDYEKARKRLDYLRTAYSSNISAVSDEINELEEFLRGVEKNYPALAEPVMVIVEEAHIFAPHGEKGGAVRILGRIAREGRKFGVGLGLVSQRPSRLSEDVLSQTNTKIIMRIVNPNDQQYVVRASEQVSGELMSDIAGLGKGEAVIVGQAISLPALVKIYNFKALGGNYGGEDIGAVERWLERKRRELEEKEKEEMYEEEGIEVDF
5'-3' nuclease, encoded next to Rad50 and Mre11 homologs G 443 Thermococcus Kodakarensis MYRLIDRRSVDRIKALLERGYREAESKLAEIEWKPLPKERKQTRVYAVDGSQGKQRLSGTIFYAVSSYAFGNGPAYRLVYTNAMLYNQGISDQIIRLQMETLENKLGYLSAKLGDVDYVMMDGTLTGSLTRPPVYPESVKGLTTIENALGKGKLKELVKKFVSLLDEHYKELEDGLREKGKINGNVILADEKLEEFEEFYKAMKGYKVRDFAGTTPRGIKISRATIDEYLKGRKSAEEIFQELLNEYGEERELSLDDARNAVHVVLGYLEYLYSLEKLLRLNLVYVAKSFYNRKLTQKLGIDIVDVPYLDAYLRKRFGEEIPGYFIITQGGKAISHKMPKVLRETFPLVEHYIEHGVPMAYVRTMKGGVIYLLQSNREVDDDLLSEILWHESNGYFRPLQRAHEGVKIEKKAFEAELKALLNIIKAESPELRVFLKYGRSPLE
5'-3' nuclease, encoded next to Rad50 and Mre11 homologs H 443 Thermococcus Kodakarensis MYRLIDRRSVDRIKALLERGYREAESKLAEIEWKPLPKERKQTRVYAVDGSQGKQRLSGTIFYAVSSYAFGNGPAYRLVYTNAMLYNQGISDQIIRLQMETLENKLGYLSAKLGDVDYVMMDGTLTGSLTRPPVYPESVKGLTTIENALGKGKLKELVKKFVSLLDEHYKELEDGLREKGKINGNVILADEKLEEFEEFYKAMKGYKVRDFAGTTPRGIKISRATIDEYLKGRKSAEEIFQELLNEYGEERELSLDDARNAVHVVLGYLEYLYSLEKLLRLNLVYVAKSFYNRKLTQKLGIDIVDVPYLDAYLRKRFGEEIPGYFIITQGGKAISHKMPKVLRETFPLVEHYIEHGVPMAYVRTMKGGVIYLLQSNREVDDDLLSEILWHESNGYFRPLQRAHEGVKIEKKAFEAELKALLNIIKAESPELRVFLKYGRSPLE
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2025-10-02
Deposition Author(s): Numata, T. , Uda, K.