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FASTA Sequence PDB Format mmCIF Format
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9WXJ

Cryo-em structure of the type iii-d2 crispr-cas effector complex bound to a non-cognate target rna in the pre-cleavage state

PDB DOI: 10.2210/pdb9wxj/pdb

Classification: IMMUNE SYSTEM
Organism(s): Gammaproteobacteria Bacterium , Synthetic Construct

Deposited: 2025-09-25
Deposition Author(s): Hiraizumi, M. , Ishikawa, J. , Mitsuda, Y. , Nagahata, N. , Nishimasu, H. , Yamashita, K.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.7 Å

9wxj
Literature

Cryo-em structure of the type iii-d2 crispr-cas effector complex bound to a non-cognate target rna in the pre-cleavage state

Hiraizumi, M. , Ishikawa, J. , Mitsuda, Y. , Nagahata, N. , Nishimasu, H. , Yamashita, K.

Primary Citation of Related Structures: 9WXJ


Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
CRISPR RNA a 43 NA AUUGAAACUUGUCUUCGACAUGGGUAAUCCUCAUGUUUGAAUG
Non-cognate target RNA (NTR) e 47 NA GGCAUUCAAACAUGAGGAUUACCCAUGUCGAAGACAAGUUUCAAUCC

Proteins
Molecule Chains Sequence Length Organism Sequence
Cas10 B 592 Gammaproteobacteria Bacterium , Synthetic Construct MGSSHHHHHHSSGLVPRGSHMNYYLRVEGVNLGSFVNDTNDLATIRGGSLLLLEAMEDIVEKILGKHSSSLSARESFDQLLDKRNVLSARIKEAKKKQDHALRKKLEQEVRDIKSQIKHLKGKISCRGKGGSSCRETISKGASWGLFELDVDESTAAKIKQGLIGAFNDDPKYKYATFVVDLYRPEDGEGYRSRRDKVQTLNRYQQLKTLSLAITNQGKDVCTLNKVTPANDERDLPANSGEKNRDYISDSVYQRREYGRGQNVYTGFYKKNTGIDGVKPTKDLEQLSSDAPYPALEGKIAYIYIDGNKFGQKQKEADSVTEQRSFDQQTREGRKEVLAGILEQIKEDPDWRCGERLRLETLLWGGDEIIWVVPAWRGWWMLKRFYELAREQIRLVTKDKNGQDEITRLFHGSSIIFCKHNAPIHRINTLARSLADGFAKIENFKKRNMIAYQVLESFDHAGTNLRDYRKNQLKGLSDKLPDFLVEAEQMEAIEDSISKLKQMEFPKRKIYQIVQQYRVGMPDEAEKLRKKITGGDYSELTPEQKEECDKIATELEHLKSIFGGSNAYWLHLMELWDYVSPERVDAELQEGE
CRISPR type III-associated protein domain-containing protein C 635 Gammaproteobacteria Bacterium , Synthetic Construct MQKATLKIGLTLKGPLITQASDPGDLGLDMVVATHQDGAHYLPGTLIVGKLRQALEELKEVVSLRGGGPMTDWFKPDLDTWLGRPSQTGLPNTKQLYFSDFDLDAESSSKMRSGLVRDRITIEAETGAVKPRHIVMIENPFVSGEEYTFTGTLHFFTTEAATILKHIKTGFNWFSQVGAMKSVGFGQVVGVGFGEPTYATITPPASAPPAVTTPYVDLVIKPIYPFCITGRSLSDNLFESAAIIPGGAIIGSIATTWSHLVGQHDGRIGDDPERKQLKENFSKLRITHAFPSTADNKRPVVAPLSLVTIDGDQKTYYDVARLEAPCLINGQPPDFALDWKDNEDTLKEYPWPFIRMKEWGWASLSAELRVRTAIDRDYHRSKKSQLFAYEQVVPSGKAWYSRLDLSRIADDYTRSAVLEQLRTLVEQGVYGLGKTKTPFELELLPADTVTPMVQSSSDPVAGRLWIVTLQTDTLLGSPEPLDETSGECELEIMYSKAWCELSNGNLRLLRYFARQKQAGGRYLKEVFQKGHSSYRPWLLTEAGSVFVLEADGDDMEEAQRLIKEWLQQGLPLTNEVRKYYRIESSRVTWEQCPFLAQNGYGEIAVNLEMDGLATVLPDDSCNITPIKRTTTGEEG
TIGR03986 family CRISPR-associated RAMP protein D 1235 Gammaproteobacteria Bacterium , Synthetic Construct SMTTVKEKSWAFTGLKRWKIITTLETQTPLHIGSGEVAEIEINDSQGDRRQVQANAIIRGKDDKPIIPGSTLKGKLRSHFESCLDHSKALERVFGKEYQSDEEQGRGGLAEFHDAVCSYVAPGNSYYPNWNEARNTYIEASTTIDCHTGTAADATLHYNECVPPGTRFLVTVTGAMSDKDAALIVAALQAFGDETNPIHLGAEEANGKGRMGLFGNVEVSCLDHDDIIAWISQGSDARMATDKFKPLGKEKVNDLAKNITTPTATGGAQRQHFGIELKFDGPFLVNDPSKYSKGDGDQPAVHQPLTDRSNNPILPARSFRGAIRAQAERIIRTMGGACCDTQSPCQNSGQLCIACQMFGTTGWKTTLSISDFTYDGEYRPAKTQQFVAIDRFHGGGKDGALFSIKYFERPVLKGGISLKLRNQNADELSWRKGLLALLFRDLQEGDITFGFGANKGYGGVEEACITNADVISTADIEAFRAKCHANHADSWCSPVSKPTNRDDKSSLPSINPATGAGHAFHNPYHFIPIKAPDTSTWLDKHKLATPGSPHSHAYYRSCSDDDKPLHHGRITCKLTAETPLFVGSGDAENQLTDSEAKLKEHYQLNNKLAIPATSLRGLISSLAEAASNSALRVLDNGVLSYRKPASRALRKIGILFKREEQWRLVQMEGNLANAIKLKSAYTNQKMMDFLANKQSWSPEHNVVYYLSADFRPGDVPQETYLAGRICGILRILGGKDGDRKNELENKKHELFIRVDEQYVDTEINRFDYEEYVRQGGIPVSPSAVERYTELADQRSLSQKNSRDLKGDNNCCSDKWLPFHLKGAARYKKEKACLLPLREYDLVYFDSDGTQVTEISFSAIWRDRVADKVHAFFPEELRPFNQKRKWISPAELLFGFVELNDNKDERDHAQAFTGKVRVAAGVLSPDDSIRQGDLQEHEPIMLKALSSPKLPSPALYFKQKSGDHRYIAKPDLKKASHQAQGRKIYLHALRDQKDDVQKLNTKGQPANGNGAHLPWKTADEDERPQLKVRIRPLKPGTSFYFHLDYNNLTEWELGLLCYVLQPSETFRHKLGMGKPIGLGTVKIEIATLQTIDRQKRYREAGANEHRHNGSNWVNESLRDELERLPGTVELSPDRQPEAKLRPDELRQSFIATMDNDIYRAIELLGDPHNIKYPVHYPQVRNKSIEQENFKWFVANDSGSGDQRKGTGIDAKEEPMRSIDQISTTIPTLNRYEWNGD
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2025-09-25
Deposition Author(s): Hiraizumi, M. , Ishikawa, J. , Mitsuda, Y. , Nagahata, N. , Nishimasu, H. , Yamashita, K.