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9WP9

Cryo-em structure of the d18:1 s1p-bound s1pr3 and gq complex

PDB DOI: 10.2210/pdb9wp9/pdb

Classification: MEMBRANE PROTEIN
Organism(s): Homo Sapiens

Deposited: 2025-09-08
Deposition Author(s): Asada, H. , Hagiwara, M. , Im, D. , Iwata, S. , Yamauchi, M.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.25 Å

Literature

Cryo-em structure of the d18:1 s1p-bound s1pr3 and gq complex

Asada, H. , Hagiwara, M. , Im, D. , Iwata, S. , Yamauchi, M.

Primary Citation of Related Structures: 9WP9


Proteins
Molecule Chains Sequence Length Organism Sequence
Engineered G-alpha-q A 242 Homo Sapiens VSAEDKAAAERSKMIDKNLREDGEKARRTLRLLLLGADNSGKSTIVKQMRILHGGSGGSGGTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVDSSDYNRLQEALNDFKSIWNNRWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRKEFVDISTASGDGRHICYPHFTCAVDTENARRIFNDCKDIILQMNLKEYNLV
Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 B 358 Homo Sapiens MHHHHHHLEVLFQGPGSSGSELDQLRQEAEQLKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN
scFv16 C 259 Homo Sapiens DVQLVESGGGLVQPGGSRKLSCSASGFAFSSFGMHWVRQAPEKGLEWVAYISSGSGTIYYADTVKGRFTISRDDPKNTLFLQMTSLRSEDTAMYYCVRSIYYYGSSPFDFWGQGTTLTVSSGGGGSGGGGSGGGGSDIVMTQATSSVPVTPGESVSISCRSSKSLLHSNGNTYLYWFLQRPGQSPQLLIYRMSNLASGVPDRFSGSGSGTAFTLTISRLEAEDVGVYYCMQHLEYPLTFGAGTKLELKAAAHHHHHHHH
Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2 G 71 Homo Sapiens MASNNTASIAQARKLVEQLKMEANIDRIKVSKAAADLMAYCEAHAKEDPLLTPVPASENPFREKKFFCAIL
Nb35 N 129 Homo Sapiens MQVQLQESGGGLVQPGGSLRLSCAASGFTFSNYKMNWVRQAPGKGLEWVSDISQSGASISYTGSVKGRFTISRDNAKNTLYLQMNSLKPEDTAVYYCARCPAPFTRDCFDVTSTTYAYRGQGTQVTVSS
Sphingosine 1-phosphate receptor 3 R 342 Homo Sapiens DYKDDDDKGSHHHHHHHHGSLEVLFQGPATALPPRLQPVRGQETLREHYQYVGKLAGRLKEASEGSTLTTVLFLVICSFIVLENLMVLIAIWKNNKFHNRMYFFIGNLALCDLLAGIAYKVNILMSGKKTFSLSPTVWFLREGSMFVALGASTCSLLAIAIERHLTMIKMRPYDANKRHRVFLLIGMCWLIAFTLGALPILGWNCLHNLPDCSTILPLYSKKYIAFCISIFTAILVTIVILYARIYFLVKSSSRKVANHNNSERSMALLRTVVIVVSVFIACWSPLFILFLIDVACRVQACPILFKAQWFIVLAVLNSAMNPVIYTLASKEMRRAFFRLVCN
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2025-09-08
Deposition Author(s): Asada, H. , Hagiwara, M. , Im, D. , Iwata, S. , Yamauchi, M.