9WJ6
An integrated in silico-in vitro workflow for discovering high-affinity, selective antibodies to the kras(g12d)-mhc i complex
PDB DOI: 10.2210/pdb9wj6/pdb
Classification: IMMUNE SYSTEM Organism(s): Homo Sapiens , Synthetic Construct
Deposited: 2025-08-30 Deposition Author(s): Jeong, B.S. , Oh, B.H. , Oh, T.S.
Experimental Data Snapshot
Method: X-RAY DIFFRACTION Resolution: 4.54 Å
An integrated in silico-in vitro workflow for discovering high-affinity, selective antibodies to the kras(g12d)-mhc i complex
Jeong, B.S. , Oh, B.H. , Oh, T.S.
Primary Citation of Related Structures: 9WJ6
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| Peptide from GTPase KRas, N-terminally processed | I | 10 | Homo Sapiens , Synthetic Construct | GADGVGKSAL |
| Peptide from GTPase KRas, N-terminally processed | P | 10 | Homo Sapiens , Synthetic Construct | GADGVGKSAL |
| C8K10D5-1 Fab Light chain | A | 234 | Homo Sapiens , Synthetic Construct | MGWSCIILFLVATATGVHSSYVLTQPPSVSVAPGQTARITCGGNNIKYRDVHWYQQKPGQAPVLVVYQDTLRPQGIPERFSGSNSGNMATLTISRVEAGDEADYYCQVWDWDTDHWVFGGGTDLTVLRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC |
| C8K10D5-1 Fab Light chain | K | 234 | Homo Sapiens , Synthetic Construct | MGWSCIILFLVATATGVHSSYVLTQPPSVSVAPGQTARITCGGNNIKYRDVHWYQQKPGQAPVLVVYQDTLRPQGIPERFSGSNSGNMATLTISRVEAGDEADYYCQVWDWDTDHWVFGGGTDLTVLRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC |
| HLA class I antigen | E | 280 | Homo Sapiens , Synthetic Construct | MSHSMRYFYTAVSRPGRGEPRFIAVGYVDDTQFVQFDSDAASPRGEPRAPWVEQEGPEYWDRETQKYKRQAQTDRVSLRNLRGYYNQSEAGSHTLQRMYGCDLGPDGRLLRGYNQFAYDGKDYIALNEDLRSWTAADKAAQITQRKWEAAREAEQRRAYLEGTCVEWLRRYLENGKKTLQRAEHPKTHVTHHPVSDHEATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPEPLTLRWHHHHHH |
| HLA class I antigen | M | 280 | Homo Sapiens , Synthetic Construct | MSHSMRYFYTAVSRPGRGEPRFIAVGYVDDTQFVQFDSDAASPRGEPRAPWVEQEGPEYWDRETQKYKRQAQTDRVSLRNLRGYYNQSEAGSHTLQRMYGCDLGPDGRLLRGYNQFAYDGKDYIALNEDLRSWTAADKAAQITQRKWEAAREAEQRRAYLEGTCVEWLRRYLENGKKTLQRAEHPKTHVTHHPVSDHEATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPEPLTLRWHHHHHH |
| C8K10D5-1 Fab heavy chain | B | 255 | Homo Sapiens , Synthetic Construct | MGWSCIILFLVATATGVHSEVQLVESGGGLVQPGRSLRLSCAASGFTFDQYAMHWVRQAPGKGLEWVSGISAYSLSIGYADSVKGRFTISRDNAKNSLYLQMNSLRAEDTAVYYCARGRSEGVYMDGMDIWGSGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDKTHHHHHHHH |
| C8K10D5-1 Fab heavy chain | L | 255 | Homo Sapiens , Synthetic Construct | MGWSCIILFLVATATGVHSEVQLVESGGGLVQPGRSLRLSCAASGFTFDQYAMHWVRQAPGKGLEWVSGISAYSLSIGYADSVKGRFTISRDNAKNSLYLQMNSLRAEDTAVYYCARGRSEGVYMDGMDIWGSGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDKTHHHHHHHH |
| Beta-2-microglobulin | F | 100 | Homo Sapiens , Synthetic Construct | MIQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYLLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDRDM |
| Beta-2-microglobulin | N | 100 | Homo Sapiens , Synthetic Construct | MIQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYLLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDRDM |
Experimental Data
Method: X-RAY DIFFRACTION
Deposited Date: 2025-08-30 Deposition Author(s): Jeong, B.S. , Oh, B.H. , Oh, T.S.