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9V9I

The transition-state structure of the argonaute protein from a verrucomicrobia bacterium in complex with guide dna and target rna.

PDB DOI: 10.2210/pdb9v9i/pdb

Classification: RNA BINDING PROTEIN/DNA/RNA
Organism(s): Verrucomicrobiota Bacterium , Synthetic Construct

Deposited: 2025-05-30
Deposition Author(s): Wu, S.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.93 Å

9v9i
Literature

The transition-state structure of the argonaute protein from a verrucomicrobia bacterium in complex with guide dna and target rna.

Wu, S.

Primary Citation of Related Structures: 9V9I


Proteins
Molecule Chains Sequence Length Organism Sequence
VbAgo A 782 Verrucomicrobiota Bacterium , Synthetic Construct MSEKQLGATLFPITGLPAQAFRLRVLRVRETIPMDTQTPVRLNRWATQLWKELKQAVVPTGRFEWPAFLTPDVESLTVGRVLTVQDVPDREYSIEVIGETVEVNPASASSEELQLAGEMIKRAISDAFGRNSDKYWRKHWNLYFRLEPENLQDRRDRVFAYRGLKFSVVFLGDKPWLAADILTTYHGQHALSEYSSEQRQRELHFHVSERIEADDRAMFLRDNGKIKIPCRFVGSTGKTVTQYTFPINGGQKNVREYYEQRYGIRVPENDEAVFVRDREGCDSWPVPASRLFPLFTTEYDEVRNCSVVPQMPPDERVETIRAFLNDLRDVSFAGSTLAIGHSHFQTAERSVFPAPALEFGNGQTLTVDASLPIEEGYNRYRQGKMTMLYEHGPFSSQSLPDLVLLYPDNLDRNAREKLRQRLGEEIKELCGVAPRIARQISYPLGKQPHAGAGLLAAADELVRNNDGTFLPVIVLADALREHIYDLLKRRLSSLASQCVRERTVARVARDEQAVGGSRLRNLALGILTAAGLQPWVLAKPLHYDFYMGVDLLANQVIYVFVCGKGGRNVWVQRGDQLRRRGITEKIDRVQLADQFKTGVREAKRLGVPLNSLVVHRDGRWWSNEDLAITEAVAELQGDGTLSKDCQVGVVEVRKSHLPVRLFSVLNATKGSLENPMPGSHLILNNTEAILTPTGQPGRWDKQGRTAGTLLLRITRNPNGSPLDIRKIAEDAYGLTHLNWNAPDIEISLPVTIRWSDERLREIVTNPSATDDTEVEPQETCIV

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
DNA (5'-D(P*TP*GP*AP*GP*GP*TP*AP*GP*TP*AP*GP*GP*TP*TP*GP*TP*AP*T)-3') b 18 NA TGAGGTAGTAGGTTGTAT
RNA (5'-R(*UP*AP*UP*AP*CP*AP*AP*CP*CP*UP*AP*CP*UP*AP*CP*CP*UP*CP*A)-3') c 19 NA UAUACAACCUACUACCUCA
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2025-05-30
Deposition Author(s): Wu, S.