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9V8A

Structure of the argonaute protein from verrucomicrobiota bacterium in complex with guide dna and target rna in dimeric state.

PDB DOI: 10.2210/pdb9v8a/pdb

Classification: RNA BINDING PROTEIN/DNA/RNA
Organism(s): Verrucomicrobiota Bacterium , Synthetic Construct

Deposited: 2025-05-29
Deposition Author(s): Wu, S.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.66 Å

9v8a
Literature

Structure of the argonaute protein from verrucomicrobiota bacterium in complex with guide dna and target rna in dimeric state.

Wu, S.

Primary Citation of Related Structures: 9V8A


Proteins
Molecule Chains Sequence Length Organism Sequence
VbAgo A 782 Verrucomicrobiota Bacterium , Synthetic Construct MSEKQLGATLFPITGLPAQAFRLRVLRVRETIPMDTQTPVRLNRWATQLWKELKQAVVPTGRFEWPAFLTPDVESLTVGRVLTVQDVPDREYSIEVIGETVEVNPASASSEELQLAGEMIKRAISDAFGRNSDKYWRKHWNLYFRLEPENLQDRRDRVFAYRGLKFSVVFLGDKPWLAADILTTYHGQHALSEYSSEQRQRELHFHVSERIEADDRAMFLRDNGKIKIPCRFVGSTGKTVTQYTFPINGGQKNVREYYEQRYGIRVPENDEAVFVRDREGCDSWPVPASRLFPLFTTEYDEVRNCSVVPQMPPDERVETIRAFLNDLRDVSFAGSTLAIGHSHFQTAERSVFPAPALEFGNGQTLTVDASLPIEEGYNRYRQGKMTMLYEHGPFSSQSLPDLVLLYPDNLDRNAREKLRQRLGEEIKELCGVAPRIARQISYPLGKQPHAGAGLLAAADELVRNNDGTFLPVIVLADALREHIYDLLKRRLSSLASQCVRERTVARVARDEQAVGGSRLRNLALGILTAAGLQPWVLAKPLHYDFYMGVDLLANQVIYVFVCGKGGRNVWVQRGDQLRRRGITEKIDRVQLADQFKTGVREAKRLGVPLNSLVVHRDGRWWSNEDLAITEAVAELQGDGTLSKDCQVGVVEVRKSHLPVRLFSVLNATKGSLENPMPGSHLILNNTEAILTPTGQPGRWDKQGRTAGTLLLRITRNPNGSPLDIRKIAEDAYGLTHLNWNAPDIEISLPVTIRWSDERLREIVTNPSATDDTEVEPQETCIV

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
DNA (5'-D(P*TP*GP*AP*GP*GP*TP*AP*GP*TP*AP*GP*GP*TP*TP*GP*TP*AP*T)-3') b 18 NA TGAGGTAGTAGGTTGTAT
RNA (5'-R(*UP*AP*UP*AP*CP*AP*AP*CP*CP*UP*AP*CP*UP*AP*CP*CP*UP*CP*A)-3') c 19 NA UAUACAACCUACUACCUCA
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2025-05-29
Deposition Author(s): Wu, S.