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9V7S

Structure of the argonaute protein from verrucomicrobia bacterium in complex with guide dna and target rna

PDB DOI: 10.2210/pdb9v7s/pdb

Classification: RNA BINDING PROTEIN/DNA/RNA
Organism(s): Verrucomicrobiota Bacterium , Synthetic Construct

Deposited: 2025-05-28
Deposition Author(s): Shan, W.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.5 Å

9v7s
Literature

Structure of the argonaute protein from verrucomicrobia bacterium in complex with guide dna and target rna

Shan, W.

Primary Citation of Related Structures: 9V7S


Proteins
Molecule Chains Sequence Length Organism Sequence
VbAgo-DM A 782 Verrucomicrobiota Bacterium , Synthetic Construct MSEKQLGATLFPITGLPAQAFRLRVLRVRETIPMDTQTPVRLNRWATQLWKELKQAVVPTGRFEWPAFLTPDVESLTVGRVLTVQDVPDREYSIEVIGETVEVNPASASSEELQLAGEMIKRAISDAFGRNSDKYWRKHWNLYFRLEPENLQDRRDRVFAYRGLKFSVVFLGDKPWLAADILTTYHGQHALSEYSSEQRQRELHFHVSERIEADDRAMFLRDNGKIKIPCRFVGSTGKTVTQYTFPINGGQKNVREYYEQRYGIRVPENDEAVFVRDREGCDSWPVPASRLFPLFTTEYDEVRNCSVVPQMPPDERVETIRAFLNDLRDVSFAGSTLAIGHSHFQTAERSVFPAPALEFGNGQTLTVDASLPIEEGYNRYRQGKMTMLYEHGPFSSQSLPDLVLLYPDNLDRNAREKLRQRLGEEIKELCGVAPRIARQISYPLGKQPHAGAGLLAAADELVRNNDGTFLPVIVLADALREHIYDLLKRRLSSLASQCVRERTVARVARDEQAVGGSRLRNLALGILTAAGLQPWVLAKPLHYDFYMGVALLANQVIYVFVCGKGGRNVWVQRGDQLRRRGITEKIDRVQLADQFKTGVREAKRLGVPLNSLVVHRAGRWWSNEDLAITEAVAELQGDGTLSKDCQVGVVEVRKSHLPVRLFSVLNATKGSLENPMPGSHLILNNTEAILTPTGQPGRWDKQGRTAGTLLLRITRNPNGSPLDIRKIAEDAYGLTHLNWNAPDIEISLPVTIRWSDERLREIVTNPSATDDTEVEPQETCIV

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
DNA (5'-D(P*TP*GP*AP*GP*GP*TP*AP*GP*TP*AP*GP*GP*TP*TP*GP*TP*AP*T)-3') b 18 NA TGAGGTAGTAGGTTGTAT
RNA (5'-R(*UP*AP*UP*AP*CP*AP*AP*CP*CP*UP*AP*CP*UP*AP*CP*CP*UP*CP*A)-3') c 19 NA UAUACAACCUACUACCUCA
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2025-05-28
Deposition Author(s): Shan, W.