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9V28

Cryo- em structure of small subunit (head) of 75s ribosome with a/p- & p/e- trnas from entamoeba histolytica

PDB DOI: 10.2210/pdb9v28/pdb

Classification: RIBOSOME
Organism(s): Entamoeba Histolytica Hm-1:Imss

Deposited: 2025-05-19
Deposition Author(s): Gourinath, S. , Kaushal, P.S. , Mishra, S. , Sharma, S.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.4 Å

9v28
Literature

Cryo- em structure of small subunit (head) of 75s ribosome with a/p- & p/e- trnas from entamoeba histolytica

Gourinath, S. , Kaushal, P.S. , Mishra, S. , Sharma, S.

Primary Citation of Related Structures: 9V28


Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
17S rRNA sa 1947 NA UAUCUGGUUGAUCCUGCCAGUAUUAUAUGCUGAUGUUAAAGAUUAAGCCAUGCAUGUGUAAGUAUAAAGACCAAGUAGGAUGAAACUGCGGACGGCUCAUUAUAACAGUAAUAGUUUCUUUGGUUAGUAAAAUACAAGGAUAGCUUUGUGAAUGAUAAAGAUAAUACUUGAGACGAUCCAGUUUGUAUUAGUACAAAAUGGCCAAUUCAUUCAAUGAAUUGAGAAAUGACAUUCUAAGUGAGUUAGGAUGCCACGACAAUUGUAGAACACACAGUGUUUAACAAGUAACCAAUGAGAAUUUCUGAUCUAUCAAUCAGUUGGUAGUAUCGAGGACUACCAAGAUUAUAACGGAUAACGAGGAAUUGGGGUUCGACAUCGGAGAGGGAGCUUUACAGAUGGCUACCACUUCUAAGGAAGGCAGCAGGCGCGUAAAUUACCCACUUUCGAAUUGAAGAGGUAGUGACGACACAUAACUCUAGAGUUGAGUAAAAUCAAUUCUUGAAGGAAUGAGUAGGAGGUAAAUUCUCCUACGAAAUCAAUUGGAGGGCAAGUCUGGUGCCAGCAGCCGCGGUAAUUCCAGCUCCAAUAGUGUAUAUUAAAGUUGCUGUGAUUAAAACGCUCGUAGUUGAAUUAAAAUGUGGUUUUAUACAUUUUGAAGACUUUAUGUAAGUAAAGUUUCUAGAAAUGUUAAAUUAAAAUCAAAGAAGGAAACAAUUCAAGUAAUUGAGUUGUUAUUACUUUGAAUAAAAUAAGGUGUUUAAAGCAAAACAUUAUGUUAAUGAAUAUUCAAGCAUGGGACAAUGCUGAGGGGAUGUCAAUAAGACAUUUCGAGAGAAGGAUUAAAAGGAACAAUUGGGGUGAUUCAGAAAAUAACGGGAGAGGUGAAAAUCCAUGAUCGCUAUAAGAUGCACGAGAGCGAAAGCAUUUCACUCAACUGUGUCCAUUAAUCAAGAACGAAAGUUAGGGGAUCGAAGACGAUCAGAUACCGUCGUAGUCCUAACUAUAAACGAUGUCAACCAAGGAUUGGAUGAAAUUCAGAUGUACAAAGAUAGAGAAGCAUUGUUUCUAGAUCUGAGUAUAUCAAUAUUACCUUGUUCAGAACUUAAAGAGAAAUCUUGAGUUUAUGGACUUCAGGGGGAGUAUGGUCACAAGGCUGAAACUUAAAGGAAUUGACGGAAGGGCACACCAGGAGUGGAGCCUGCGGCUUAAUUUGACUCAACACGGGAAAACUUACCAAGACCGAACAGUAGAAGGAAUGACAGAUUAAGAGUUCUUUCAUGAUUUAUUGGGUAGUGGUGCAUGGCCGUUCUUAGUUGGUGGAGUGAUUUGUCAGGUUAAUUCCGGUAACGAACGAGACUGAAACCUAUUAAUUAGUUUUCUGCCUAUAAGACAGAAAUGUUCGCAAGAACAGGUGCGUAAGUACCACUUCUUAAAGGGACACAUUUCAAUUGUCCUAUUUUAAUUGUAGUUAUCUAAUUUCGGUUAGACCUCUUUUAACGUGGGAAAAAGAAAAAGGAAGCAUUCAGCAAUAACAGGUCUGUGAUGCCCUUAGACAUCUUGGGCCGCACGCGCGCUACAAUGGAGUUACUAGAGAGUAUUUUAUCAUUUACACCUUAUUUAUUAGGCUUUGUCUAAUAAUUAAGGAUAGUAAGUGGUGUACCGAGAUUGAAAUAGUUAAGGAAAACUCAAAAGAACGUACAUGACAGGGAUAAAUGAUUGGAAUUAUUUGUUUUGAACGAGGAAUUCCUUGUAAUAUCGAGUCAUUAACUCGAGAUGAAUACGUCCCUGCCCUUUGUACACACCGCCCGUCGCUCCUACCGAUUGAAUAAAGAGGUGAAAUUCUAGGAUUCUGUCUUAUAGAUAGAAAAAUGGAUUUAAAUCUCCUUAUUUAGAGGAAGGAGAAGUCGUAACAAGGUUUCCGUAGGUGAACCUGCGGAAGGAUCAUUA

Proteins
Molecule Chains Sequence Length Organism Sequence
40S ribosomal protein S17, putative ST 117 Entamoeba Histolytica Hm-1:Imss MGGVRTKTVKRAARNIIEKYYPLLTLDFHTNKRVVDEVAVVETKRLRNKIAGFITHLMRRIQKGPVRGISFKLQEEERERRDNYVPEKSEVNIDKITADPVTLKMLESIGMPINKKN
Small ribosomal subunit protein uS13 SU 155 Entamoeba Histolytica Hm-1:Imss MATVTSESEFQHMLRVCNTNLDGRRKVPYALTGIKGCGRRYAYLVCKRAGIDVNKRAGLMTPAEIEKIVDILNNPLNYKIPVWFLNRQKDNKDGKDSQLIANAVETRLREDIEALKKMRAHRGLRHYWGLRVRGQHTKTTGRRGRTVGVSRTKGA
Small ribosomal subunit protein eS19 SV 155 Entamoeba Histolytica Hm-1:Imss MHHFSNIKDVVAIDFIKAYAEHLKKSGKLEIPEWVDTVKTGMCKELAPLNPDWIYIRAAAIARKVYLNNGIGVMALRRAYGDQYNKHYNPSHRTLGSGKVNRYILQQLEKMGIVAKIQSGRSLTKEGRKDMDKIAFQVYKEHEAKVTPMILMPMN
40S ribosomal protein S20, putative SW 118 Entamoeba Histolytica Hm-1:Imss MANIKKDIKAPVTPKVYKNITITITSTKVKAVESLCAEVKENGKKKGVQVKGPVRIPTKTLRITTRKTPCGEGSKTWDHYQMRIYKRVLSMKTTPETVKEITSLKVEPGVELEVAMFD
40S ribosomal protein S3 SD 244 Entamoeba Histolytica Hm-1:Imss MFCLTKTKALNVDVLKTNISRKHKFVADGVFYAELNELLQRELSADGYSGVEVRKNGSKFQIIIRATRTTNIIGDKGRRIHELTNLLIARFGFPKDKIELYVEKVLARGLCPVSQAESIKYKIAEGLPVRRAVGSVMRLIMDSGAKGCEVSISGKLRGQRAQGMVFKEGYMIKSGNATRQFYSSAVRCVLLRMGIIGIKVTIMLDTDPSGKNGPAARIPDVVEIKTPKDESTTVKTEVIPANKQ
Ribosomal protein S29, putative SE 56 Entamoeba Histolytica Hm-1:Imss MGSYSIYNAHPRNYGNGSRTCRKCGARKGLIRKYGLDLCRRCFREKAVEIGFQKLD
Small ribosomal subunit protein uS7 SG 206 Entamoeba Histolytica Hm-1:Imss MAEAVAQPVETVAHTFAPKLFNKWSYDVTVSDISLKELLAINSKLKYQVFLPHTAGRYQIKPFRKIQCPIVERLVCCMMQHGKNSGKKLLAMRVVEESFEIIHLLTEKNPIQVLVDAIINASPREDSTRVGTGGNAKRQAVDVSPLRRINQALYLMTMGCRSAAFRNSKTLAECLADEIVNASKSNTASFAIKKKEDMERVAKSNR
40S ribosomal protein S10, putative SL 127 Entamoeba Histolytica Hm-1:Imss MRIATKDIIAIYKQLFNDGCIVCHKDFVCLHPVFGIPNLQVFMLMKGLATKKCVKETCNWRCLYWTLNDEGIAYLRQKLALPEDAVPSTLKQSIHTAVHDEAKQIQGERKLKKDFNAGKKPEMKKAE
40S ribosomal protein S15, putative SQ 144 Entamoeba Histolytica Hm-1:Imss MSETVAKKRTFKKFELQGKSLEEITAMPEADFVKMLDARARRSYRRSPKLKHERLVKKLLKIKKATKEGEKPKLVKTHCRDKIILPNMIGSVIGVYNGKSFTTVEIKPEMLGHYLGEFSITYKPVTHGRPGVGATHSSKFVPLK
40S ribosomal protein S16, putative SS 158 Entamoeba Histolytica Hm-1:Imss MSATVKATGKTQKKHTEALKSVQVFGKKKTAIAVCLCKEGKGMIRVNGVPLDLINPPVLRIKVFEPLFIVGKENYAKLDLKIRVTGGGQVAQAYAIRQAIAKALIAYNQKFVDETTKNELKAKFLEYDRTLLVADPRRCEAKKFGGPGARAKYQKSYR
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2025-05-19
Deposition Author(s): Gourinath, S. , Kaushal, P.S. , Mishra, S. , Sharma, S.