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FASTA Sequence PDB Format mmCIF Format
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9V25

Cryo- em structure of large subunit (lsu) of 75s ribosome with a/p- & p/e- trnas from entamoeba histolytica

PDB DOI: 10.2210/pdb9v25/pdb

Classification: RIBOSOME
Organism(s): Entamoeba Histolytica Hm-1:Imss

Deposited: 2025-05-19
Deposition Author(s): Gourinath, S. , Kaushal, P.S. , Mishra, S. , Sharma, S.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.0 Å

Literature

Cryo- em structure of large subunit (lsu) of 75s ribosome with a/p- & p/e- trnas from entamoeba histolytica

Gourinath, S. , Kaushal, P.S. , Mishra, S. , Sharma, S.

Primary Citation of Related Structures: 9V25


Proteins
Molecule Chains Sequence Length Organism Sequence
60S ribosomal protein L26, putative LA 213 Entamoeba Histolytica Hm-1:Imss MKFNCKVSSNPSKARKALYTANASQRALMMSARLSKELREKYNVIAIPIHKDDEVKIIKGHQKVAGKVTAVRRSKYVINIDKLTKTKANGQTVPIAIRPSNVIITKLFLNKDREALLAKKAESRKSYKELVAKRNEEVAKAFTAVYPALNMDIFGKKVEPITEKKPIRIPSKKMAEKLMSKPTLRAYKTGIKVHKAKNAIAAYKAALAKKIAK
60S ribosomal protein L35a, putative LJ 108 Entamoeba Histolytica Hm-1:Imss MSKCRLHVNAVFMGFQRAQRNQYPNVALLQISGVNTKEDTPFYIGKRVAYVYKVNVKKGSNKPAIRAIFGKIVAPHGNHGVVKARFLHNLPPKAMGQNLKVFLYPSNI
60S ribosomal protein L36, putative LK 104 Entamoeba Histolytica Hm-1:Imss MARGIAVGLKRGYPVHTMKTAKRHYGVTKRKHVVNDVIREACGFSAYERHMMDLLRRGLDKKALKYAKKHLGTHKRGLAKRDEIQRALEAIKAAHAHLGHHEQH
60S ribosomal protein L37-A, putative LL 77 Entamoeba Histolytica Hm-1:Imss MTKGTSCRGTRHNKTHILCKRCGKRSWHLQKQRCASCGYPDAKMRQYAWGYKALRRRTQGTGRMRHLKIALKRTTKA
60S ribosomal protein L37a, putative LM 93 Entamoeba Histolytica Hm-1:Imss MARRTKKVGIVGKYGTRYGASLRKVIKKIEIAQHSKYVCPFCCKEAVRRTACGIWECKGCKKQIAGGAYTLSTISGATVRSTVRRLRDAKNSQ
60S ribosomal protein L38 putative LN 77 Entamoeba Histolytica Hm-1:Imss MPKQVQEFKQILKLLKSGSIRAVRVKTNGENTKFKVRCAKYLYTYICADKAKAEELKKAIPKDIHVVEIAKKAPKAE
Ribosomal protein L39, putative LO 51 Entamoeba Histolytica Hm-1:Imss MTGHKGFSYKLKLGKKIHQNRGVPQWFRMKTGNTINYNFKRRHWNRRKMGM
60S ribosomal protein L40, putative LP 56 Entamoeba Histolytica Hm-1:Imss MGIEPALEAIARKYNCDKMICRRCYARLPLRATTCRKKKCGHSGDLRPKKKIQSKK
60S ribosomal protein L44, putative LQ 98 Entamoeba Histolytica Hm-1:Imss MVVVPKTRKTYCPRCDKHTPHKVSQYKKGKDSLHVQGKRRYDRKQQGFGGQTKPVFKKKAKTTKKVVLKIECTKCKYKLQKCLKRCKHFELGNEKKDK
60S ribosomal protein L17, putative LR 179 Entamoeba Histolytica Hm-1:Imss MVKYCAKPVNVAKAAQARGDNLKVHFKNTYETADAIRGMKVARAQEFLKNVIIKKEIVPFRKHNGGVGRKAQCKGLNCAFGRWPVKSAQFILKLLKNAVDNAKAKGLNTALLTVSHIAVQEARSSRRRLYRAHGSINSFSSSPCHIELILTEKEKKVAKPTEGIKGKKSTHQKIAYVLN
60S ribosomal protein L18, putative LS 168 Entamoeba Histolytica Hm-1:Imss MAIDLDRHHVRKHVSKTARGNNAYMKLLVRLYGFLARRTQSKFAKTILHRLCLSRVNRPIVSTSKLACLMKKHPEETAVCVNTVTYDSRYPVPKMNVCALKFTKTAEAAITKAGGKCLRFDELALKAPTGRKTVLIRGKRNVREALKHFGKVCAKKNPAKQYKGKQTK
60S ribosomal protein L27, putative LB 139 Entamoeba Histolytica Hm-1:Imss MSKILAPGRVVIILSGRFAGKKAVVSSVNLQGTKDRKYGFVTVVGVERAPLKITRKMSAKVQEMRTSVKSFCKVINVNHVMPTKYTVNLEQFNLIKQVKINNFEAGKVYPISQKKAISSQFAEEYRKGKESWLFTKLRF
60S ribosomal protein L18a LT 173 Entamoeba Histolytica Hm-1:Imss MKEYYITARCTDKAHNPNEIFRSRVFAPNYVVAKSKFWMMLKKQHKVKKINAELLQCQPIFEKNPTVVKNYQIFLRYVSAGGIHNITKQYRDVTRVGAVRQMYNDLASQYRTRQDKIQLISITTVGDKAVKNPVLHQFVGHHVKFPMVHCKPVIASKRFNLPIKAGKLTTKLC
Ribosomal protein L19 LU 198 Entamoeba Histolytica Hm-1:Imss MVSLKLQKRLAASVLKCGNRKVWLDPNETPEISLANSRKAIRKLIKDRLIIKKPAAMHSRARVVERKQAKILGRHTGHGKRKGTKNARTPQKTLWIIRMRVLRRLLLKYRTTGKIDKHMYHDFYLKVKGNQYKNKKALMESIFKALEEKKLLAKASVQVTKKSTFITEKKPVVAEEPKKVVEKKEEKKSKAGKKNAKK
60S ribosomal protein L21, putative LV 166 Entamoeba Histolytica Hm-1:Imss MPLSNGRNRRTRKLFKRPFRGHGLSNTSTILHTYKVGDYVTILCNSSIQHGLPYKAFHGKTGRVWNVNPHAIGVMVNKKVNNRIVVKRLHISPEHIKPSGCQKDFLERKAAVAAIRKQNIQLKKEGKPLLPLPAKRLPKQPRPAELIKGADIKFTTVAPLKFEELY
Large ribosomal subunit protein eL22 LW 137 Entamoeba Histolytica Hm-1:Imss MSKTIKAPAANKVLVEKKKINKTEEKTFSCTIDLTNCTDFIEPKKLVTFFRQTIKVQGRAGNTKGIEVKVADKKVTITTSSAKLCKRYMKYLMKKYLKKNNLREWLRVISDKKDGFELKFFNVQNDEEEVAEETNAQ
60S ribosomal protein L23, putative LX 140 Entamoeba Histolytica Hm-1:Imss MPKRGAGGRQGNKFRVTCGLNNASTVNCADNTGAKTLTIISVKGFHGRLNRLPRAGCGDMVVATCKKGKPEYRKKMHTAVIIRQRRTWRRKDGVTLYFEDNAAVIVNMKGEMKGSAITGPVSKESADLWPKISSNAPTIV
Ribosomal protein L23A, putative LY 121 Entamoeba Histolytica Hm-1:Imss MAGTKRYTTAFHRPATKNAAKAPKYPRSLKANRNKMDEFSIIKFPLATETALKKIEDHNTLVFLCEQKANKTMIKKAVEKRYGVKVIKVNTLVRLDGLKKAFVRLAPDVEAMEVATKIGLF
60S ribosomal protein L24, putative LZ 163 Entamoeba Histolytica Hm-1:Imss MSIKTQVCAFSGFKIPVAKGRKYVRLDLKSFTFINKKSLMQFLRKTNPRKVFWTAIYRQLNKKGQQNELVEKKKTRRVIKVNRGYSGISAEEIAKRKQTQSSEVLAKKRNAAIKEIKEKKAENAAKKEAARKEAKANGKKATNTYKKSNAKLPKAGHANFNSR
Large ribosomal subunit protein uL2 LD 257 Entamoeba Histolytica Hm-1:Imss MGRRTLSQRKGRGSIFKSRSHHKLGVAQHRAIDFFERHSTVRGLVKSIEHDPGRGAPLARVVFRNPRQYGLDKELFICAEGLYSGQYIYCGSKASLHIGNVLPIGQCPEGTVVCNVESKPGDRGIIARASGNYATVISHNADNETTRIRLPSGAKKTLKSNCRAMVGIIAGGGRTEKPILKAGVAYRMYKAKRTTWPRVRGVAMNPVDHPHGGGNHQHVGHPTTLKRSSPPGQKAGKVAARRTGLIRGGNKEGAADN
60S ribosomal protein L3, putative LE 402 Entamoeba Histolytica Hm-1:Imss MSHRKFEAPRHGSLAFHPRKRVHKVRATVSAFPKDNAAEKPHLTGFLGFKAGMTHVIREVKRTNTKLPKDGVLEPVTIIETPPMVVAGFVGYKKTTTGLKPITAVFAEHIADEFKRRYTKKWYKNTKNQFAVHTEKYNDVKAKSKRERQIRLIKNRCDVVRVIAHTQMALVPLKQKKAEVMEIQINGGSIAEKVDFAVSLLEKQISVNSVFGTDECIDVCSVTKGHGYNGVIKRFGVRHLPRKTHRGLRKVACVGAWHPARVSWTVARAGQMGFFKRTEVNKKIYRLGCGDLKNAKTEFDITEKGITPMGGFPHYGVVKNDFLMIKGTVAGIRRRVISLRKACFPSTTRTAQEQIVLKFIDTSSKYGHSRFQTTTEKKARMGPMKKDLERQRAEKVEEGKKL
60S ribosomal protein L4, putative LF 431 Entamoeba Histolytica Hm-1:Imss MSLRPFVTIYDGITGEAEKTPVRLPAVFLAPIRGDVVHFVYRNQSKNTRQPEGVSTEAGKQHSAISWGTGRAVARIPRISGSGSGRNGQGAFGNMTRKGHMFSPLKNFRKWQRKTPKQMRRFAVASCIAASAVPALVSARGHHIAGVPQIPLVVNSKSISVIKKTKQAVYLLKKINAYSDVLKVIASKTVRAGQGKMRGRKIKERKGPLVVYGNDDLQAVKAFRNIPGVDTCRVENLSVLNLAPGCHMGRFIIWTESAFKKLNTIFGTQKKMAQGKSGFRIAHAQMAVPDMKRVVVAAEKAKLLRAKIVLPKVPKRANPLKNWAAMVKLNPYAKIASHKLAQVAKAQAAHKAQYAAKMEKILAAKKEALNQSVAKRFGKTQKVDGKVIKVKVENNLLKATVKRTAKQDAYMKKYDGIVKANAKKYAEKIGF
60S ribosomal protein L5, putative LG 286 Entamoeba Histolytica Hm-1:Imss MGFLKVIKNRAYFKKYQTQFRRRREGKTDYYARRKMIFQDKDKFKTPKYRVVVRITNKTVIAQIAYSEIIGDKILCAAYSHELPRYGVKLGLTNYAAAYCTGLLLARRLLQKLGMDKQFVGVSDAAKLGEDYTPEEVDERRPFKCILDVGLARTTTGSKVFAVLKGMCDGGVYVPHSATRFAGAGENEEALRSRILGGHVAAYMKYLSGEDADLYKKQFGRFIAAGIAPEALENIYIEAHKKIRENPAAEKKEKKEHKKYPTSKKLTLEQRKAAIQAKLAKLAQQA
Large ribosomal subunit protein eL6 LH 204 Entamoeba Histolytica Hm-1:Imss MSAPQWFVPVKAGDAKVPAYYPTDDMIQEQKKKLRTRKGAKITALDKPAWNLEKLRKSIVPGAILIIVAGKYAGKKVVFLKQCIKSGALIVTGPFKINGVPLMRINQRYVIATSQKVDVSKVDTTGVDVKFFKKIAIKKAAFGKTVEEDFAKKQYEAKKALIVEKQKQVDESIVAEIKKVPYLKEYMASYFTLKNGDHPHLLKF
60S ribosomal protein L7, putative LI 230 Entamoeba Histolytica Hm-1:Imss MSAKVATAVQRETCTKTVCPCKARCQAFRKEVILRTIKNHKDIEAAKKAVYTAKKNAEINGDLYAEADPKLIVAIRIRGINGVSPKIKKILKLLRLRQINNAVFIKANASTIKMLRLVDPYVTYGYPTLETVQKLIYKRGALKINGNRMPITSNCMIKKALGDKDVVCVDDLVHEIYTVGKHFKEVNNKLAPFKLNGAKIAEKNKKIHFILGGGFGNRELLINKLLANMI
Unknown peptide SH 6 Entamoeba Histolytica Hm-1:Imss XXXXXX

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
5S rRNA lc 117 NA AGGUAGAUUACCUGACGUUCCCAUCUGUGUGAACAUAAUGGUACUGAUCAGGCUCUAAGCAUCUUUACUUCCGUGUUCGGAUGGGAACGGGUGUAUCCUACUUGAUAUGAACCUACC
A/P- tRNA si 76 NA GGCCCCAUAGCUCAGGGAUGAGAGCACGCGACUCUUAAUCGCGUGGUCGCAGGUUCAAGUCCUGCUGGGGCCACCA
P/E- tRNA sj 77 NA CUCUUCAUGGUGCAGCCCGUUAGCUCGUCGGGCUUUUAACCCGAAGGUCUUCGGUUCAAAUCCGGCCGAAGAAACCA
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2025-05-19
Deposition Author(s): Gourinath, S. , Kaushal, P.S. , Mishra, S. , Sharma, S.