9UPV
Cryo-em structure of cxcr4 complexed with agonist sdvx1
PDB DOI: 10.2210/pdb9upv/pdb
Classification: SIGNALING PROTEIN Organism(s): Escherichia Coli , Homo Sapiens , Oplophorus Gracilirostris , Synthetic Construct
Deposited: 2025-04-29 Deposition Author(s): Hu, H.L. , Huang, Z.W. , Jiao, H.Z. , Sang, X.H.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 2.7 Å
Cryo-em structure of cxcr4 complexed with agonist sdvx1
Hu, H.L. , Huang, Z.W. , Jiao, H.Z. , Sang, X.H.
Primary Citation of Related Structures: 9UPV
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 | B | 384 | Escherichia Coli , Homo Sapiens , Oplophorus Gracilirostris , Synthetic Construct | HHHHHHHHHHLEVLFQGPGSSGSELDQLRQEAEQLKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWNGASGASGASGASVSGWRLFKKIS |
| Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2 | C | 71 | Escherichia Coli , Homo Sapiens , Oplophorus Gracilirostris , Synthetic Construct | MASNNTASIAQARKLVEQLKMEANIDRIKVSKAAADLMAYCEAHAKEDPLLTPVPASENPFREKKFFCAIL |
| Stromal cell-derived factor 1 | J | 8 | Escherichia Coli , Homo Sapiens , Oplophorus Gracilirostris , Synthetic Construct | KPVSLSYR |
| Soluble cytochrome b562,C-X-C chemokine receptor type 4,Oplophorus-luciferin 2-monooxygenase catalytic subunit | R | 648 | Escherichia Coli , Homo Sapiens , Oplophorus Gracilirostris , Synthetic Construct | MKTIIALSYIFCLVFADYKDDDDKGSADLEDNWETLNDNLKVIEKADNAAQVKDALTKMRAAALDAQKATPPKLEDKSPDSPEMKDFRHGFDILVGQIDDALKLANEGKVKEAQAAAEQLKTTRNAYIQKYLLVPRGSMEGISIYTSDNYTEEMGSGDYDSMKEPCFREENANFNKIFLPTIYSIIFLTGIVGNGLVILVMGYQKKLRSMTDKYRLHLSVADLLFVITLPFWAVDAVANWYFGNFLCKAVHVIYTVSLYSSVLILAFISLDRYLAIVHATNSQRPRKLLAEKVVYVGVWIPALLLTIPDFIFANVSEADDRYICDRFYPNDLWVVVFQFQHIMVGLILPGIVILSCYCIIISKLSHSKGHQKRKALKTTVILILAFFACWLPYYIGISIDSFILLEIIKQGCEFENTVHKWISITEALAFFHCCLNPILYAFLGAKFKTSAQHALTSVSRGSSLKILSKGKRGGHSSVSTESESSSFHSSVFTLEDFVGDWEQTAAYNLDQVLEQGGVSSLLQNLAVSVTPIQRIVRSGENALKIDIHVIIPYEGLSADQMAQIEEVFKVVYPVDDHHFKVILPYGTLVIDGVTPNMLNYFGRPYEGIAVFDGKKITVTGTLWNGNKIIDERLITPDGSMLFRVTINS |
| Guanine nucleotide-binding protein G(i) subunit alpha-1 | A | 354 | Escherichia Coli , Homo Sapiens , Oplophorus Gracilirostris , Synthetic Construct | MGCTLSAEDKAAVERSKMIDRNLREDGEKAAREVKLLLLGAGESGKSTIVKQMKIIHEAGYSEEECKQYKAVVYSNTIQSIIAIIRAMGRLKIDFGDSARADDARQLFVLAGAAEEGFMTAELAGVIKRLWKDSGVQACFNRSREYQLNDSAAYYLNDLDRIAQPNYIPTQQDVLRTRVKTTGIVETHFTFKDLHFKMFDVGAQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCSTDTKNVQFVFDAVTDVIIKNNLKDCGLF |
| single-chain variable fragment scFv16 | S | 259 | Escherichia Coli , Homo Sapiens , Oplophorus Gracilirostris , Synthetic Construct | DVQLVESGGGLVQPGGSRKLSCSASGFAFSSFGMHWVRQAPEKGLEWVAYISSGSGTIYYADTVKGRFTISRDDPKNTLFLQMTSLRSEDTAMYYCVRSIYYYGSSPFDFWGQGTTLTVSSGGGGSGGGGSGGGGSDIVMTQATSSVPVTPGESVSISCRSSKSLLHSNGNTYLYWFLQRPGQSPQLLIYRMSNLASGVPDRFSGSGSGTAFTLTISRLEAEDVGVYYCMQHLEYPLTFGAGTKLELKAAAHHHHHHHH |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2025-04-29 Deposition Author(s): Hu, H.L. , Huang, Z.W. , Jiao, H.Z. , Sang, X.H.