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9UPR

Cryo-em structure of the n-terminal domain of omicron ba.1 in complex with nanobody n103 and s2l20 fab

PDB DOI: 10.2210/pdb9upr/pdb

Classification: VIRAL PROTEIN
Organism(s): Homo Sapiens , Severe Acute Respiratory Syndrome Coronavirus 2 , Vicugna Pacos

Deposited: 2025-04-28
Deposition Author(s): Han, P. , Liu, B. , Liu, H.H. , Wang, C.M. , Wang, Q.H.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.77 Å

Literature

Cryo-em structure of the n-terminal domain of omicron ba.1 in complex with nanobody n103 and s2l20 fab

Han, P. , Liu, B. , Liu, H.H. , Wang, C.M. , Wang, Q.H.

Primary Citation of Related Structures: 9UPR


Proteins
Molecule Chains Sequence Length Organism Sequence
S2L20 light chain A 236 Homo Sapiens , Severe Acute Respiratory Syndrome Coronavirus 2 , Vicugna Pacos METDTLLLWVLLLWVPGSTGDVIWMTQSPSSLSASVGDRVTITCQASQDIRFYLNWYQQKPGKAPKLLISDASNMETGVPSRFSGSGSGTDFTFTISSLQPEDIATYYCQQYDNLPFTFGPGTKVDFKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGECS
S2L20 heavy chain B 473 Homo Sapiens , Severe Acute Respiratory Syndrome Coronavirus 2 , Vicugna Pacos METDTLLLWVLLLWVPGSTGDEVQLVESGGGVVQPGGSLRLSCAASGFTFNSYGMHWVRQAPGKGLEWVAFIRYDGGNKYYADSVKGRFTISRDNSKNTLYLQMKSLRAEDTAVYYCANLKDSRYSGSYYDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSCDKTHTCPPCPAPELLGGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEALHNHYTQKSLSLSPGK
nanobody N103 E 122 Homo Sapiens , Severe Acute Respiratory Syndrome Coronavirus 2 , Vicugna Pacos QVQLQESGGGLVQPGGSLRLSCAASVNLFIGATMAWYRQAPGNQRELVATIGAGGTTNYADSVKGRFTASRDDAKKTIYLQMNSLTPEDTAVYYCNYGSMSNPRTSGPNAFWGRGTQVTVSS
Spike glycoprotein F 306 Homo Sapiens , Severe Acute Respiratory Syndrome Coronavirus 2 , Vicugna Pacos MFVFLVLLPLVSSQCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHVISGTNGTKRFDNPVLPFNDGVYFASIEKSNIIRGWIFGTTLDSKTQSLLIVNNATNVVIKVCEFQFCNDPFLDHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPIREPEDLPQGFSALEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSHHHHHH
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2025-04-28
Deposition Author(s): Han, P. , Liu, B. , Liu, H.H. , Wang, C.M. , Wang, Q.H.