9TZE
70s coxiella burnetii ribosome with doxycycline and hpfcold
PDB DOI: 10.2210/pdb9tze/pdb
Classification: RIBOSOME Organism(s): Coxiella Burnetii
Deposited: 2026-01-22 Deposition Author(s): Harmer, N.J. , Isupov, M.N. , Stuart, W.S.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 2.48 Å
70s coxiella burnetii ribosome with doxycycline and hpfcold
Harmer, N.J. , Isupov, M.N. , Stuart, W.S.
Primary Citation of Related Structures: 9TZE
| Nucleic Acids / Hybrid | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| 23S ribosomal RNA | a | 2925 | NA | GGUUGCAUGGUCAAGUGAAUAAGCGCAUAUGGUGGAUGCCUUGGCAGUAAGAGGCGAUGAAGGACGUAGUAGCCUGCGAUAAGCUUCGGGGAGCUGGCAAACAAGCGAUGAUCCGGAGAUUUCCGAAUGGGGAAACCCAACCUUUCGAGGUUAUCGUAUACUGAAUUCAUAGGUAUACGAGGCGAACCUGGGGAACUGAAACAUCUAAGUACCCAGAGGAAAAGAAAUCAACCGAGAUUCCGUCAGUAGCGGCGAGCGAAAGCGGAACAGCCCAGUUACUAAAUCAUUAUUUGUUCUAGCAGAAUGUUCUGGAAAGUUCAGCCAUAGCGGGUGAUAGCCCCGUACGCGAAAGAGUAAAUAAUGUGGGUAACGAUGAGUAGGUCGGGACACGUGGUAUCUUGACUGAACAUGGGGGGACCAUCCUCCAAGGCUAAAUACUCCUUACUGACCGAUAGCGAACCAGUACCGUGAGGGAAAGGUGAAAAGAACCCCGGCGAGGGGAGUGAAAUAGAACCUGAAACCGUAUGCGUACAAGCAGUAGGAGCAUUUCUUCGGAAAUGUGACUGCGUACCUUUUGUAUAAUGGGUCAGCGACUUACUUGUUGUAGCGAGCUUAACCGUCUAGGGGAGGCGUAGGGAAACCGAGUCCGAAAUGGGCGUUUAGUUGCAACGAGUAGACCCGAAACCGAGCGAUCUAUCUAUGGCCAGGGUGAAGGUCAGGUAACACUGACUGGAGGCCCGAACCCACUAAUGUUGAAAAAUUAGGGGAUGAGCUGUGGAUAGGAGUGAAAGGCUAAUCAAGCUCGGAGAUAGCUGGUUCUCCUCGAAAGCUAUUUAGGUAGCGCCUCGUGUAUGACUCUUGGGGGUAGAGCACUGUUUCGGCUAGGGGGCCAUCCCGGCCUACCAAACCGAGGCAAACUCCGAAUACCAAGAAGUUUUAGCACGGGAGACACACUGCGGGUGAUAAGGUCCGUGGUGGAAAGGGAAACAGCCCAGAUCGCCAGCUAAGGUCCCAAAAUCACAGUUAAGUGGAAAACGAUGUGGGAAGGCUCAGACAGCCAGGAGGUUGGCUUAGAAGCAGCCAUCCUUUAAAGAAAGCGUAAUAGCUCACUGGUCGAGUCGUCCUGCGCGGAAGAUUUAACGGGGCUCAAACUGUGUACCGAAGCUGCGGCAUCAGAAGACACUGUCUUCUGAUGGGUAGAGGAGCGUUCUGUAAGCCUGUGAAGGUGAAUCGAGAGGUUUGCUGGAGGUAUCAGAAGUGCGAAUGCUGACAUAAGUAACGAUAAUGUGGGUGAAAAACCCACACGCCGAAAGUCUAAGGUUUCCUGCGCAACGUUAAUCGACGCAGGGUGAGUCGGCCCCUAAGGCGAGGCAGAAAUGCGUAGUCGAUGGGAAACGGGUUAAUAUUCCCGUACUUUAUAAUACUGCGAUGGGAGGACGGAGAAGGCUAGGUCAGCCACCCGAUGGUUGUGGUGGUUUAAGUGUGUAGGAAGGGUUCUUUGGCAAAUCCGGGAACUCAAUUCCGAGACAUGAUGACGAAGUACGAACUUGUUCGUGCAAAGUGAUUGAUGCCACGCUUCCAGGAAAAGUCCCUAAGCUUCAGGUAUUGUAAAACCGUACUAUAAACCGACACAGGUGGACAGGUAGAGAAUACCAAGGCGCUUGAGAGAACUUGGGUGAAGGAACUAGGCAAAAUGGCACCGUAACUUCGGGAGAAGGUGCGCCCUUGGUAAGUGAAGGUCCUUGCGACUGGAGCUGAAAAGGGUUGCAGAUACCAGGUGGCUGCGACUGUUUACUAAAAACACAGCACUCUGCAAACUCGUAAGAGGACGUAUAGGGUGUGACGCCUGCCCGGUGCCGGAAGGUUAAGUGAUGGGGUUAGCCCUCGGGCGAAGCUCUUGAUCGAAGCCCCGGUAAACGGCGGCCGUAACUAUAACGGUCCUAAGGUAGCGAAAUUCCUUGUCGGGUAAGUUCCGACCUGCACGAAUGGCGUAACGAUAGCCACGCUGUCUCCACCCAAGACUCAGUGAAAUUGAAAUCGCUGUGAAGAUGCAGCGUACCCGCGGCUAGACGGAAAGACCCCGUGAACCUUUACUACAGCUUUACACUGAACUUUGAAUAUGCCUGUGUAGGAUAGGUGGGAGGCUUUGAAGCUGGAGCGCUAGCUCCAGUGGAGCCAACCUUGAAAUACCACCCUGGCGUGUUUGAGGUUCUAACCCUGUCCCGUAAUCCGGGUCGGGAACAGUGUAUGGUGGGUAGUUUGACUGGGGCGGUCUCCUCCAAAAGAGUAACGGAGGAGUACAAAGGUACCCUCAGCACGGUCGGAAAUCGUGCAUUGUGUGCAAAGGCAUAAGGGUGCUUGACUGCGAGACUGACAAGUCGAGCAGGUACGAAAGUAGGUCUUAGUGAUCCGGUGGUCCUUUAUGGAAGGGCCAUCGCUCAACGGAUAAAAGGUACUCCGGGGAUAACAGGCUGAUACCACCCAAGAGUUCAUAUCGACGGUGGUGUUUGGCACCUCGAUGUCGGCUCAUCACAUCCUGGGGCUGUAGCCGGUCCCAAGGGUAUGGCUGUUCGCCAUUUAAAGUGGUACGUGAGCUGGGUUUAGAACGUCGUGAGACAGUUCGGUCCCUAUCUGCCGUGGGCGUUGGAGAUUUGAGAGGAGCUGCUCCUAGUACGAGAGGACCGGAGUGGACGUACCUCUGGUGUUCCGGUUGUCACGCCAGUGGCAUUGCCGGGUAGCUAAGUACGGACGGGAUAACCGCUGAAAGCAUCUAAGCGGGAAGCCCCCCUCAAGAUGAGAUCUCCCGGACCUUUAAGGUCCCUAAAGAUUCGUUGAAGACGACAACGUUGAUAGGCAGGGUGUGGAAGCUCAGUAAUGAGUGAAGCUAACCUGUACUAAUUAAUCGUGCGACUUGACUAUGUAACC |
| 5S ribosomal RNA | b | 117 | NA | UUCCUGGCGGCCAUAGCGAGCGGGCCCCACCUGAUUCCAUUCCGAACUCAGAAGUGAAAACGCUUAGCGCCGAUGAUAGUGUGGGUCUCCCAUGCGAAAGUAGGUCACCGCCAGGUU |
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| Large ribosomal subunit protein uL15 | K | 143 | Coxiella Burnetii | MQLNDLKPAKGARHQKLRVGRGIGSGKGKTAGRGHKGQHSRAGGYHKVGFEGGQMPLQRRVPKFGFTSRKELISAEVRLGELNKISGDVVDLASLKAANIISRQIKRVKIFAAGKLEKPVTIRGLRVTKGVKAAVEAAGGKIE |
| Small ribosomal subunit protein uS12 | L | 124 | Coxiella Burnetii | MARINQLVRKPRRARAKKSDVPALEGCPQRRGVCTRVYTTTPKKPNSALRKVARVRITNGAEVTAYIGGEGHNLQEHSVVLIRGGRVKDLPGVRYHIVRGSLDTAGVSGRRRGRSKYGEKKPKE |
| Large ribosomal subunit protein bL17 | M | 126 | Coxiella Burnetii | MHHRKSGRHLNRTSAHRKAMLRNMAVSLFQHELIKTTLPKAKELRRVVEPLITLAKEDTVANRRLAFNRLRDDAIVAKLFKEIAPRHKERPGGYCRVLKYGFRNGDSAPMAIVELVDREESESSED |
| Small ribosomal subunit protein uS14 | N | 99 | Coxiella Burnetii | MAKLSVIERNKKRVRKSQSARKKRLELKKIIKKGTPEEQEQALLKLQKRPRDESPVRTRDRCRLCGRPCGTFKKFGLCRIHLREAAMRADVPGLKKASW |
| Large ribosomal subunit protein uL2 | O | 275 | Coxiella Burnetii | MALVKTKPTSPGRRFVVKVVHPELHKGDPYAPLVESKNRINSRNNQGRITVRRRGGGHKRNYRIIDFKRDKEGIEGKVERLEYDPNRSAHIALVLYPDGERRYIIAPKGVHKGSKVVSGREAPIRPGNCLPLQNIPLGATIHNIELKPGKGAQLVRSAGASAQLAAKEGIYAIIRMRSGETRKILAVCRACIGEVSNSEHNLRSLGKAGAKRWRGRRPTVRGVAMNPVDHPHGGGEGKTSGGRHPVSPTGKPTKGYKTRRNKRTSNMIIRDRRKK |
| Small ribosomal subunit protein bS16 | P | 137 | Coxiella Burnetii | MVVIRLARGGSKKNPFYHIVVADRRKPRDGRFIERVGYYNPMARGQDIRLQLEKERISHWLNQGAQTSLRVKHLIKKLEKSPEEAQKGGMRKGEFKRLQAEQAAKAQKKAVATEEPKAEEAKEAPPAESQAAEGKEE |
| Large ribosomal subunit protein bL9 | Q | 152 | Coxiella Burnetii | MKLILQEKVANLGNIGDQVVVKPGYARNFLLPLGKAVPATPEHIAEFEKQRAELEKAAAELLAKAKARAKKLEDKSFKITANASDEGRLFGSIGPREIAQAITEAGIEIEKREVDLSQGPIRQVGEYEVPLRLHTDVSVNVKIEVAPENSNS |
| Large ribosomal subunit protein uL29 | R | 65 | Coxiella Burnetii | MNVNDLRNKTKAELKKELLELLKEQFNLRMQKGGGEAPRPHLFKRVRRDIARVKTLLGEKERNNE |
| Large ribosomal subunit protein uL16 | S | 137 | Coxiella Burnetii | MLQPSNRKYRKDFKGRNRGVASRGNRVSFGEFGLKATECARITARQLEAARRTIARHIKRGGKITIRIFPDKPITKKPLEVRQGKGKGSVEYWVALVQPGRMIFEIEGVDEALAREAFSRAAAKLPLKCLFVKRTVM |
| Large ribosomal subunit protein uL30 | T | 63 | Coxiella Burnetii | MVQEKKLRVTLVKSKYGRKPGHRECIEGLGLRRMHQTVEVTDTPANRGMIEKVSYLLMIDEEV |
| Large ribosomal subunit protein bL19 | C | 115 | Coxiella Burnetii | MNNIIQLLETEQTQGKEIPDFRAGDTVTVQVKVKEGNRERLQAFEGVVIARRHRGLNSSFTVRKVSHGEGVERVFQLYSPLIASIKVNRRGDVRRAKLYYLRNLRGRKAKIKEKI |
| Large ribosomal subunit protein bL25 | U | 244 | Coxiella Burnetii | MAAESFELIAELREFTGKSAARRMRRFEDKVPGTVYGAGKAPQSITLLQKDLLKALESESTFSSILTLKVGDKKQKVILKALQRHHTKPKIVHIDFQRIKASEKLIMNVPLHFLGEDDCPGVEAGGVVSHLQSEVEIRCLPADLPEYIEVDLSHLQLDESVHLSNLKLPAGVGLTSAVDEEHDSPIASVHMPRVSKADVEAEAAEAALAKEAATEAAEEEETEKPASEAEASGEAEQADTDKKE |
| Large ribosomal subunit protein bL35 | Z | 64 | Coxiella Burnetii | MPKLKTNRGAVKRFKVTGSGKIKRAASNHNHILTKKSQKRKRRLRKIHEVAPSDMRAVSEMLRD |
| Large ribosomal subunit protein bL33 | 0 | 70 | Coxiella Burnetii | MAVSPREKIMLQSTGKTKAGKPTGTFYTTYKNKRNTTDKLNIKKFDPRAWNSETSKCGMHVLFKEKKIPK |
| Large ribosomal subunit protein uL24 | 1 | 107 | Coxiella Burnetii | MAIKKIKKDDTVIVITGRDKGRQGKVLKVLPNSRLLVEGINLVKKHVKPNPNKNEQGGILERELSIHVSNVAIYNPAAKKADRVGIKTLEDGSKVRIFKSNGEVIDV |
| Large ribosomal subunit protein uL18 | 2 | 117 | Coxiella Burnetii | MDKQEKRIRRARRTRAKIKELGAVRLCVHRSLNHIYAQLISPRDSKVLVCASTLEKEVRSQIKHGGNIQAATAIGKLIAQRAKKAGVTKVAFDRSGYKYHGRVRALAEAVREGGIEF |
| Large ribosomal subunit protein bL36 | 3 | 40 | Coxiella Burnetii | MKVRASVKRMCRNCKVIRRNGVVRVICSDARHKQRQKGGK |
| Small ribosomal subunit protein uS4 | D | 206 | Coxiella Burnetii | MARYLGPKCRLSRREKTDLQLKSGIRAIDSKCNIERIPGMHWQRRGRTTDYGVQLRMKQMIKRYYDVLEKQFANYYKQADRLKGSTGDNLLKLLESRLDNVVYRMGFAATRAEARQLISHKAILVNGEVVNIPSYQVKPGDIIEVRSRAKGQLRIKGALELAQQRAPISWIEVDTKKMTGTFKEQPDVAELPAEFKVNLVVELYSK |
| Small ribosomal subunit protein uS5 | E | 168 | Coxiella Burnetii | MQEAGIGTTTDGIQEKLVAVRRTAKVVKGGRVFGFSALVVAGDGDGKVGFGLGKAREVPSAIQKATENARRNMISVPLYGATLHHAIKATHASSTVLMLPASEGTGVIAGNAMRAIFEVMGVQNVLAKCIGSSNPINVVRATFKGLKQMETPESVAAKRGKAIEEIVE |
| Small ribosomal subunit protein bS6 | F | 127 | Coxiella Burnetii | MRHYEIVILVHPDQSSQVPAMVERYQSMIKEKDGKVHRLEDWGRRQLAYSIDKVHKAHYLLMNIESDQGVISELENAFRYNDAVIRSLILKRDHAITKSSLIMQGAEKGKSSRKEKVAAEAEASEEA |
| Small ribosomal subunit protein uS7 | G | 191 | Coxiella Burnetii | MARRKAAPKRETLPDPLFHSELLAKFINAVMRNGKKSVAEKIVYGALDVVAKRVQNKSGEQGDGDGESGGKAGGIKKRSLGDIRTDENARALALETFKGALDKVMPNVEVKSRRVGGSTYQVPVEIRMARRQALARRWLVEYANKRNEKTMVLRLAHEILDAVEGRGGAIKKREDVHRMAKANQAFAHYKW |
| Small ribosomal subunit protein uS8 | H | 130 | Coxiella Burnetii | MMQDPISDMLTRIRNAQAVRKKEVVMPRSKLKMSIANVLKEEGYIVDYREEGDLTKAQLVITLKYHEGESVISEIRRVSSPALQVYKSKDELPKVKNGLGIAIISTSKGVMSDRQARRLGEGGEVLCYVS |
| Small ribosomal subunit protein uS9 | I | 139 | Coxiella Burnetii | MAQAAKKQNLGTGRRKTSSARVFLRSGTGQIIINGLPLDEYFGRETARMVVRQPLVKLDVQSRFDVYATVQGGGDSGQAGAIRHGITRALIQYDEEGGEGGTWRSTLRKAGFVTRDPRMVERKKVGLHGARRGTQFSKR |
| Small ribosomal subunit protein uS10 | J | 110 | Coxiella Burnetii | MSDNQRIRIRLKAFDHRLIDRSTREIVETARRTGAIIRGPILLPTKIERYTVLISPNIDKDARDQYEIRTHKRLVDISEPTDKTVDALMKLDLAAGVDVQIELLNKKSGA |
| Large ribosomal subunit protein bL32 | V | 64 | Coxiella Burnetii | MAVQKSRKTRSRRGMRRSHDALRGAMLSKDPTTGETHLRHHISPEGYYKGRQILTPKESYEDEE |
| Large ribosomal subunit protein uL4 | W | 205 | Coxiella Burnetii | MELPVNSFDKKEASTLTVADSAFGSEYKEGLVHQVVNAYLAGGRAGTKAQKTRREVSGGGAKPWRQKGTGRARAGSSRSPLWRSGGVAFAAKPRDFTQKVNRKMYRSAMASILSELIRREQLVVVDSLKLNEPKTRELKESLKKLNLGNVLIIIDGDDRNINLASRNMVGVSVCDALHVDPVSLVAAENIVVTVDAVKRLEERLS |
| Large ribosomal subunit protein uL14 | X | 122 | Coxiella Burnetii | MIQTQSIVDVADNSGARRVMCIKVLGGSKRRYANIGDVIKVSIKEAIPRGKVKKGDVMHAVVVRTRKGVRRNDGSLIRFDNNAVVLLNNQLQLVGTRVFGPVVRELRTDKFMKIISLALEVL |
| Large ribosomal subunit protein bL34 | Y | 44 | Coxiella Burnetii | MKRTYQPSKQKRNRTHGFRARMATKNGRQVLNRRRAKGRKRLTV |
| Large ribosomal subunit protein bL31 | 4 | 79 | Coxiella Burnetii | MKENIHPPYKQIKVTCSCGNTFMTGSTLDRELHLEICSACHPFYTGQQKMVDTAGRVERFRKKYAKRRAANASPEDEKK |
| Ribosome hibernation promoting factor | 9 | 183 | Coxiella Burnetii | MRRSFMQVPLQITLRNIDPTPAIEDRIHKKADKLSQYSDQIISCHIVVELPKRHQHQGKLYNVRINLTLPGKEFAVNRNEVEDLYVAIRNAFDDMARKVEEEMRMRMGHVKTHPELLQGEIVRLFKEKDFGFIATPDGEEFYFNAGNVVHPTFEKLEVGTTVQFIEAIGDDGAQAHRVSAKER |
| Large ribosomal subunit protein bL27 | 8 | 90 | Coxiella Burnetii | MAHKKAGGSTRNGRDSNPKMLGVKRFGGERVLAGNIIVRQRGTHYRPGENMGMGRDHTLYALIEGKVKFTRKGPKKRNFVSIEPLEESQP |
| Large ribosomal subunit protein uL23 | 7 | 95 | Coxiella Burnetii | MNEERLFEILLAPHISEKGALTTGQYVFEVMPDATKPEIKRAVEKQFNVTVKSVRTCNVKGKTTRFRQVRGRRKNWKKAYVMLAPGSEIDIAAGE |
| Large ribosomal subunit protein bL28 | 6 | 79 | Coxiella Burnetii | MAKVCQVTGKRPQSGNNVSHANKKTNRRFLPNLKKRRFWLPDEKRFITLTVSTHGMRIIDKLGINAVLKKIREREKESK |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2026-01-22 Deposition Author(s): Harmer, N.J. , Isupov, M.N. , Stuart, W.S.