9TZ5
Triple stack doxycycline bound 50s subunit of the coxiella burnetii ribosome
PDB DOI: 10.2210/pdb9tz5/pdb
Classification: ANTIBIOTIC Organism(s): Coxiella Burnetii , Synthetic Construct
Deposited: 2026-01-22 Deposition Author(s): Harmer, N.J. , Isupov, M.N. , Stuart, W.S.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 2.22 Å
Triple stack doxycycline bound 50s subunit of the coxiella burnetii ribosome
Harmer, N.J. , Isupov, M.N. , Stuart, W.S.
Primary Citation of Related Structures: 9TZ5
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| Large ribosomal subunit protein bL35 | Z | 64 | Coxiella Burnetii , Synthetic Construct | MPKLKTNRGAVKRFKVTGSGKIKRAASNHNHILTKKSQKRKRRLRKIHEVAPSDMRAVSEMLRD |
| Large ribosomal subunit protein uL5 | F | 182 | Coxiella Burnetii , Synthetic Construct | MVELQELYKKTITPALQKEFGFKSVMAVPRLEKITLNMGLGEAVADKKVIERAMDDMIKISGQKPLITYARKSEAGFKIRAGWPIGCKVTLRRDRMYEFLKRLISIAIPRIRDFRGLSPKSFDGRGNYSLGIREQIVFPEIQYDKVDAIRGMDITITTTARTDEEGRALLKAFGFPLKDESR |
| Large ribosomal subunit protein uL6 | G | 178 | Coxiella Burnetii , Synthetic Construct | MVSRVAKNPIKIPTGVEVNVAGQQITVKGKLGTLTRVIHRAVKVTKTDAELQTICANDSPGSNALAGTARAVLANMVQGVHTGFQRKLVMVGVGYRAKAEGKKLNLTVGLSHPVNIEMPEGITVETPSQTEIIVKGADKQRVSQVAANIREIRPPEPYKGKGIRYDNERVILKEAKKK |
| Large ribosomal subunit protein bL21 | H | 115 | Coxiella Burnetii , Synthetic Construct | MYAIIKTGGKQYRVTEGQMLKVEKLAQDVGQSVKFDDVLMVAAGDELHIGTPSVKDAAVTAEVVDQGRQAKIEIIKFKRRKHHMKRQGHRQDFTAVKITEIALGKAKKEVKTDGA |
| Large ribosomal subunit protein uL13 | I | 142 | Coxiella Burnetii , Synthetic Construct | MATYMANAKTVSPRWLLVNAEGKTLGRLASRIAAILRGKHKAEFTPHVDAGDFVVVINVDKLKVTGNKTQDKQYHHHSGYPGGLKTINFADLQAKKPQRILELAIKGMLPKGPLGRQLYRKLKIYAGDQHPHQAQQPELIDL |
| Large ribosomal subunit protein uL22 | J | 115 | Coxiella Burnetii , Synthetic Construct | MEVAAKLKYARISAQKARLVADQVRGLGAEQAVNLLRFSNKKAAALMKKVLDSAIANAEHNEGADIDELKVSTVMVDEGPSARRFHARARGRANQILKRTCHITVKVSDSQVEND |
| Large ribosomal subunit protein uL15 | K | 143 | Coxiella Burnetii , Synthetic Construct | MQLNDLKPAKGARHQKLRVGRGIGSGKGKTAGRGHKGQHSRAGGYHKVGFEGGQMPLQRRVPKFGFTSRKELISAEVRLGELNKISGDVVDLASLKAANIISRQIKRVKIFAAGKLEKPVTIRGLRVTKGVKAAVEAAGGKIE |
| Large ribosomal subunit protein bL17 | M | 126 | Coxiella Burnetii , Synthetic Construct | MHHRKSGRHLNRTSAHRKAMLRNMAVSLFQHELIKTTLPKAKELRRVVEPLITLAKEDTVANRRLAFNRLRDDAIVAKLFKEIAPRHKERPGGYCRVLKYGFRNGDSAPMAIVELVDREESESSED |
| Large ribosomal subunit protein uL2 | O | 275 | Coxiella Burnetii , Synthetic Construct | MALVKTKPTSPGRRFVVKVVHPELHKGDPYAPLVESKNRINSRNNQGRITVRRRGGGHKRNYRIIDFKRDKEGIEGKVERLEYDPNRSAHIALVLYPDGERRYIIAPKGVHKGSKVVSGREAPIRPGNCLPLQNIPLGATIHNIELKPGKGAQLVRSAGASAQLAAKEGIYAIIRMRSGETRKILAVCRACIGEVSNSEHNLRSLGKAGAKRWRGRRPTVRGVAMNPVDHPHGGGEGKTSGGRHPVSPTGKPTKGYKTRRNKRTSNMIIRDRRKK |
| Large ribosomal subunit protein bL9 | Q | 152 | Coxiella Burnetii , Synthetic Construct | MKLILQEKVANLGNIGDQVVVKPGYARNFLLPLGKAVPATPEHIAEFEKQRAELEKAAAELLAKAKARAKKLEDKSFKITANASDEGRLFGSIGPREIAQAITEAGIEIEKREVDLSQGPIRQVGEYEVPLRLHTDVSVNVKIEVAPENSNS |
| Large ribosomal subunit protein uL29 | R | 65 | Coxiella Burnetii , Synthetic Construct | MNVNDLRNKTKAELKKELLELLKEQFNLRMQKGGGEAPRPHLFKRVRRDIARVKTLLGEKERNNE |
| Large ribosomal subunit protein bL33 | 0 | 70 | Coxiella Burnetii , Synthetic Construct | MAVSPREKIMLQSTGKTKAGKPTGTFYTTYKNKRNTTDKLNIKKFDPRAWNSETSKCGMHVLFKEKKIPK |
| Large ribosomal subunit protein uL16 | S | 137 | Coxiella Burnetii , Synthetic Construct | MLQPSNRKYRKDFKGRNRGVASRGNRVSFGEFGLKATECARITARQLEAARRTIARHIKRGGKITIRIFPDKPITKKPLEVRQGKGKGSVEYWVALVQPGRMIFEIEGVDEALAREAFSRAAAKLPLKCLFVKRTVM |
| Large ribosomal subunit protein uL30 | T | 63 | Coxiella Burnetii , Synthetic Construct | MVQEKKLRVTLVKSKYGRKPGHRECIEGLGLRRMHQTVEVTDTPANRGMIEKVSYLLMIDEEV |
| Large ribosomal subunit protein bL25 | U | 244 | Coxiella Burnetii , Synthetic Construct | MAAESFELIAELREFTGKSAARRMRRFEDKVPGTVYGAGKAPQSITLLQKDLLKALESESTFSSILTLKVGDKKQKVILKALQRHHTKPKIVHIDFQRIKASEKLIMNVPLHFLGEDDCPGVEAGGVVSHLQSEVEIRCLPADLPEYIEVDLSHLQLDESVHLSNLKLPAGVGLTSAVDEEHDSPIASVHMPRVSKADVEAEAAEAALAKEAATEAAEEEETEKPASEAEASGEAEQADTDKKE |
| Large ribosomal subunit protein bL32 | V | 64 | Coxiella Burnetii , Synthetic Construct | MAVQKSRKTRSRRGMRRSHDALRGAMLSKDPTTGETHLRHHISPEGYYKGRQILTPKESYEDEE |
| Large ribosomal subunit protein uL4 | W | 205 | Coxiella Burnetii , Synthetic Construct | MELPVNSFDKKEASTLTVADSAFGSEYKEGLVHQVVNAYLAGGRAGTKAQKTRREVSGGGAKPWRQKGTGRARAGSSRSPLWRSGGVAFAAKPRDFTQKVNRKMYRSAMASILSELIRREQLVVVDSLKLNEPKTRELKESLKKLNLGNVLIIIDGDDRNINLASRNMVGVSVCDALHVDPVSLVAAENIVVTVDAVKRLEERLS |
| Large ribosomal subunit protein uL14 | X | 122 | Coxiella Burnetii , Synthetic Construct | MIQTQSIVDVADNSGARRVMCIKVLGGSKRRYANIGDVIKVSIKEAIPRGKVKKGDVMHAVVVRTRKGVRRNDGSLIRFDNNAVVLLNNQLQLVGTRVFGPVVRELRTDKFMKIISLALEVL |
| Large ribosomal subunit protein bL34 | Y | 44 | Coxiella Burnetii , Synthetic Construct | MKRTYQPSKQKRNRTHGFRARMATKNGRQVLNRRRAKGRKRLTV |
| Large ribosomal subunit protein bL27 | 8 | 90 | Coxiella Burnetii , Synthetic Construct | MAHKKAGGSTRNGRDSNPKMLGVKRFGGERVLAGNIIVRQRGTHYRPGENMGMGRDHTLYALIEGKVKFTRKGPKKRNFVSIEPLEESQP |
| Large ribosomal subunit protein uL24 | 1 | 107 | Coxiella Burnetii , Synthetic Construct | MAIKKIKKDDTVIVITGRDKGRQGKVLKVLPNSRLLVEGINLVKKHVKPNPNKNEQGGILERELSIHVSNVAIYNPAAKKADRVGIKTLEDGSKVRIFKSNGEVIDV |
| Large ribosomal subunit protein uL23 | 7 | 95 | Coxiella Burnetii , Synthetic Construct | MNEERLFEILLAPHISEKGALTTGQYVFEVMPDATKPEIKRAVEKQFNVTVKSVRTCNVKGKTTRFRQVRGRRKNWKKAYVMLAPGSEIDIAAGE |
| Large ribosomal subunit protein bL28 | 9 | 79 | Coxiella Burnetii , Synthetic Construct | MAKVCQVTGKRPQSGNNVSHANKKTNRRFLPNLKKRRFWLPDEKRFITLTVSTHGMRIIDKLGINAVLKKIREREKESK |
| Large ribosomal subunit protein uL18 | 2 | 117 | Coxiella Burnetii , Synthetic Construct | MDKQEKRIRRARRTRAKIKELGAVRLCVHRSLNHIYAQLISPRDSKVLVCASTLEKEVRSQIKHGGNIQAATAIGKLIAQRAKKAGVTKVAFDRSGYKYHGRVRALAEAVREGGIEF |
| Large ribosomal subunit protein bL36 | 3 | 40 | Coxiella Burnetii , Synthetic Construct | MKVRASVKRMCRNCKVIRRNGVVRVICSDARHKQRQKGGK |
| Large ribosomal subunit protein bL19 | C | 115 | Coxiella Burnetii , Synthetic Construct | MNNIIQLLETEQTQGKEIPDFRAGDTVTVQVKVKEGNRERLQAFEGVVIARRHRGLNSSFTVRKVSHGEGVERVFQLYSPLIASIKVNRRGDVRRAKLYYLRNLRGRKAKIKEKI |
| Large ribosomal subunit protein uL3 | D | 217 | Coxiella Burnetii , Synthetic Construct | MSIGLIGRKCGMTRIFTETGSSIPVTVVEVILNRITQVKTVETDGYRAFQVAYGKKSSARVNKPLAGHYSKAAVEAGNALREFRLGNEELTEAKAGDELKVDIFKEGQVVDVRGLTRGKGFAGTVKRHNFRTQDATHGNSLSHRAPGSIGQCQTPGRVWKGKKMAGQLGNVYCTVQSQEIIKVDVERNLLLIKGALPGAPGGEVIITQSSKKRKEDK |
| Large ribosomal subunit protein bL20 | E | 119 | Coxiella Burnetii , Synthetic Construct | MPRVKRGVTARARHKKVLTKAKGYYGARSRVFRVAKQAVIKAAQYAYRDRKQRKRQFRALWIVRINAAAREHGLSYSRLINGLMKASVAIDRKNLAELAVYDKAAFGKLAEKAKQALGG |
| Nucleic Acids / Hybrid | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| 23S ribosomal RNA | a | 2925 | NA | GGUUGCAUGGUCAAGUGAAUAAGCGCAUAUGGUGGAUGCCUUGGCAGUAAGAGGCGAUGAAGGACGUAGUAGCCUGCGAUAAGCUUCGGGGAGCUGGCAAACAAGCGAUGAUCCGGAGAUUUCCGAAUGGGGAAACCCAACCUUUCGAGGUUAUCGUAUACUGAAUUCAUAGGUAUACGAGGCGAACCUGGGGAACUGAAACAUCUAAGUACCCAGAGGAAAAGAAAUCAACCGAGAUUCCGUCAGUAGCGGCGAGCGAAAGCGGAACAGCCCAGUUACUAAAUCAUUAUUUGUUCUAGCAGAAUGUUCUGGAAAGUUCAGCCAUAGCGGGUGAUAGCCCCGUACGCGAAAGAGUAAAUAAUGUGGGUAACGAUGAGUAGGUCGGGACACGUGGUAUCUUGACUGAACAUGGGGGGACCAUCCUCCAAGGCUAAAUACUCCUUACUGACCGAUAGCGAACCAGUACCGUGAGGGAAAGGUGAAAAGAACCCCGGCGAGGGGAGUGAAAUAGAACCUGAAACCGUAUGCGUACAAGCAGUAGGAGCAUUUCUUCGGAAAUGUGACUGCGUACCUUUUGUAUAAUGGGUCAGCGACUUACUUGUUGUAGCGAGCUUAACCGUCUAGGGGAGGCGUAGGGAAACCGAGUCCGAAAUGGGCGUUUAGUUGCAACGAGUAGACCCGAAACCGAGCGAUCUAUCUAUGGCCAGGGUGAAGGUCAGGUAACACUGACUGGAGGCCCGAACCCACUAAUGUUGAAAAAUUAGGGGAUGAGCUGUGGAUAGGAGUGAAAGGCUAAUCAAGCUCGGAGAUAGCUGGUUCUCCUCGAAAGCUAUUUAGGUAGCGCCUCGUGUAUGACUCUUGGGGGUAGAGCACUGUUUCGGCUAGGGGGCCAUCCCGGCCUACCAAACCGAGGCAAACUCCGAAUACCAAGAAGUUUUAGCACGGGAGACACACUGCGGGUGAUAAGGUCCGUGGUGGAAAGGGAAACAGCCCAGAUCGCCAGCUAAGGUCCCAAAAUCACAGUUAAGUGGAAAACGAUGUGGGAAGGCUCAGACAGCCAGGAGGUUGGCUUAGAAGCAGCCAUCCUUUAAAGAAAGCGUAAUAGCUCACUGGUCGAGUCGUCCUGCGCGGAAGAUUUAACGGGGCUCAAACUGUGUACCGAAGCUGCGGCAUCAGAAGACACUGUCUUCUGAUGGGUAGAGGAGCGUUCUGUAAGCCUGUGAAGGUGAAUCGAGAGGUUUGCUGGAGGUAUCAGAAGUGCGAAUGCUGACAUAAGUAACGAUAAUGUGGGUGAAAAACCCACACGCCGAAAGUCUAAGGUUUCCUGCGCAACGUUAAUCGACGCAGGGUGAGUCGGCCCCUAAGGCGAGGCAGAAAUGCGUAGUCGAUGGGAAACGGGUUAAUAUUCCCGUACUUUAUAAUACUGCGAUGGGAGGACGGAGAAGGCUAGGUCAGCCACCCGAUGGUUGUGGUGGUUUAAGUGUGUAGGAAGGGUUCUUUGGCAAAUCCGGGAACUCAAUUCCGAGACAUGAUGACGAAGUACGAACUUGUUCGUGCAAAGUGAUUGAUGCCACGCUUCCAGGAAAAGUCCCUAAGCUUCAGGUAUUGUAAAACCGUACUAUAAACCGACACAGGUGGACAGGUAGAGAAUACCAAGGCGCUUGAGAGAACUUGGGUGAAGGAACUAGGCAAAAUGGCACCGUAACUUCGGGAGAAGGUGCGCCCUUGGUAAGUGAAGGUCCUUGCGACUGGAGCUGAAAAGGGUUGCAGAUACCAGGUGGCUGCGACUGUUUACUAAAAACACAGCACUCUGCAAACUCGUAAGAGGACGUAUAGGGUGUGACGCCUGCCCGGUGCCGGAAGGUUAAGUGAUGGGGUUAGCCCUCGGGCGAAGCUCUUGAUCGAAGCCCCGGUAAACGGCGGCCGUAACUAUAACGGUCCUAAGGUAGCGAAAUUCCUUGUCGGGUAAGUUCCGACCUGCACGAAUGGCGUAACGAUAGCCACGCUGUCUCCACCCAAGACUCAGUGAAAUUGAAAUCGCUGUGAAGAUGCAGCGUACCCGCGGCUAGACGGAAAGACCCCGUGAACCUUUACUACAGCUUUACACUGAACUUUGAAUAUGCCUGUGUAGGAUAGGUGGGAGGCUUUGAAGCUGGAGCGCUAGCUCCAGUGGAGCCAACCUUGAAAUACCACCCUGGCGUGUUUGAGGUUCUAACCCUGUCCCGUAAUCCGGGUCGGGAACAGUGUAUGGUGGGUAGUUUGACUGGGGCGGUCUCCUCCAAAAGAGUAACGGAGGAGUACAAAGGUACCCUCAGCACGGUCGGAAAUCGUGCAUUGUGUGCAAAGGCAUAAGGGUGCUUGACUGCGAGACUGACAAGUCGAGCAGGUACGAAAGUAGGUCUUAGUGAUCCGGUGGUCCUUUAUGGAAGGGCCAUCGCUCAACGGAUAAAAGGUACUCCGGGGAUAACAGGCUGAUACCACCCAAGAGUUCAUAUCGACGGUGGUGUUUGGCACCUCGAUGUCGGCUCAUCACAUCCUGGGGCUGUAGCCGGUCCCAAGGGUAUGGCUGUUCGCCAUUUAAAGUGGUACGUGAGCUGGGUUUAGAACGUCGUGAGACAGUUCGGUCCCUAUCUGCCGUGGGCGUUGGAGAUUUGAGAGGAGCUGCUCCUAGUACGAGAGGACCGGAGUGGACGUACCUCUGGUGUUCCGGUUGUCACGCCAGUGGCAUUGCCGGGUAGCUAAGUACGGACGGGAUAACCGCUGAAAGCAUCUAAGCGGGAAGCCCCCCUCAAGAUGAGAUCUCCCGGACCUUUAAGGUCCCUAAAGAUUCGUUGAAGACGACAACGUUGAUAGGCAGGGUGUGGAAGCUCAGUAAUGAGUGAAGCUAACCUGUACUAAUUAAUCGUGCGACUUGACUAUGUAACC |
| 5S ribosomal RNA | b | 117 | NA | UUCCUGGCGGCCAUAGCGAGCGGGCCCCACCUGAUUCCAUUCCGAACUCAGAAGUGAAAACGCUUAGCGCCGAUGAUAGUGUGGGUCUCCCAUGCGAAAGUAGGUCACCGCCAGGUU |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2026-01-22 Deposition Author(s): Harmer, N.J. , Isupov, M.N. , Stuart, W.S.