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FASTA Sequence PDB Format mmCIF Format
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9TVT

Crystal structure of sars-cov-2 receptor binding domain (rbd-beta variant) in complex with 3d2 fab and 1d1 fab

PDB DOI: 10.2210/pdb9tvt/pdb

Classification: VIRAL PROTEIN
Organism(s): Homo Sapiens , Severe Acute Respiratory Syndrome Coronavirus 2

Deposited: 2026-01-13
Deposition Author(s): Cicek, H. , Focht, D. , Kimbung, Y.R. , Pisitkun, T. , Welin, M.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.85 Å

9tvt
Literature

Crystal structure of sars-cov-2 receptor binding domain (rbd-beta variant) in complex with 3d2 fab and 1d1 fab

Cicek, H. , Focht, D. , Kimbung, Y.R. , Pisitkun, T. , Welin, M.

Primary Citation of Related Structures: 9TVT


Proteins
Molecule Chains Sequence Length Organism Sequence
Spike protein S1 A 231 Homo Sapiens , Severe Acute Respiratory Syndrome Coronavirus 2 RVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGNIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVKGFNCYFPLQSYGFQPTYGVGYQPYRVVVLSFELLHAPATVCGPKKSTNLVKNKCVNFSGHHHHHH
Spike protein S1 B 231 Homo Sapiens , Severe Acute Respiratory Syndrome Coronavirus 2 RVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGNIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVKGFNCYFPLQSYGFQPTYGVGYQPYRVVVLSFELLHAPATVCGPKKSTNLVKNKCVNFSGHHHHHH
1D1 FAB HEAVY CHAIN C 221 Homo Sapiens , Severe Acute Respiratory Syndrome Coronavirus 2 EVLLVESGGGLIQPGGSLRLSCAASGFTVSSNYMIWVRQAPGKGLEWVSLIYSGGSTFYADSVKGRFIISRDSSKNTLYLQMNSLRAEDTAVYYCAREPYGDKAWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDKT
1D1 FAB HEAVY CHAIN H 221 Homo Sapiens , Severe Acute Respiratory Syndrome Coronavirus 2 EVLLVESGGGLIQPGGSLRLSCAASGFTVSSNYMIWVRQAPGKGLEWVSLIYSGGSTFYADSVKGRFIISRDSSKNTLYLQMNSLRAEDTAVYYCAREPYGDKAWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDKT
1D1 FAB LIGHT CHAIN D 214 Homo Sapiens , Severe Acute Respiratory Syndrome Coronavirus 2 DIQMTQSPSSLSASVGDRVTITCQASQDINKYLNWYQQKPGKAPKPLISDTSNLQPGVPSRFSGSGAGTDFTLTISSLQPEDIATYYCQQYDNLPITFGQGTRLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
1D1 FAB LIGHT CHAIN L 214 Homo Sapiens , Severe Acute Respiratory Syndrome Coronavirus 2 DIQMTQSPSSLSASVGDRVTITCQASQDINKYLNWYQQKPGKAPKPLISDTSNLQPGVPSRFSGSGAGTDFTLTISSLQPEDIATYYCQQYDNLPITFGQGTRLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
3D2 FAB HEAVY CHAIN E 231 Homo Sapiens , Severe Acute Respiratory Syndrome Coronavirus 2 EVQLVQSGAEVKKPGDSLKISCKGSGYSFANYWIGWVRQKPGKGLEWMGIIYPGDSDTRYSPSSLGQVSISVDKSISTAYLQWSSLKASDTAMYYCARHPIHGYGSGSLYNPDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDKT
3D2 FAB HEAVY CHAIN I 231 Homo Sapiens , Severe Acute Respiratory Syndrome Coronavirus 2 EVQLVQSGAEVKKPGDSLKISCKGSGYSFANYWIGWVRQKPGKGLEWMGIIYPGDSDTRYSPSSLGQVSISVDKSISTAYLQWSSLKASDTAMYYCARHPIHGYGSGSLYNPDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDKT
3D2 FAB LIGHT CHAIN F 216 Homo Sapiens , Severe Acute Respiratory Syndrome Coronavirus 2 QSVLTQPPSVSAAPGQKVTISCSGSNSNIGINYVSWYQQLPETAPKLLIYENNQRPSGIPDRFSGSKSGTSATLGITGLQTGDEADYYCGTWDTSLGAYVFGTGTKVTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS
3D2 FAB LIGHT CHAIN J 216 Homo Sapiens , Severe Acute Respiratory Syndrome Coronavirus 2 QSVLTQPPSVSAAPGQKVTISCSGSNSNIGINYVSWYQQLPETAPKLLIYENNQRPSGIPDRFSGSKSGTSATLGITGLQTGDEADYYCGTWDTSLGAYVFGTGTKVTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2026-01-13
Deposition Author(s): Cicek, H. , Focht, D. , Kimbung, Y.R. , Pisitkun, T. , Welin, M.