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9TGO

Cryo-em structure of z22 mab in complex with left-handed z-dna (dimer of trimer)

PDB DOI: 10.2210/pdb9tgo/pdb

Classification: DNA BINDING PROTEIN
Organism(s): Mus Musculus , Synthetic Construct

Deposited: 2025-12-02
Deposition Author(s): Chin, D.H.R. , Luo, D. , Luo, Y.B.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.8 Å

9tgo
Literature

Cryo-em structure of z22 mab in complex with left-handed z-dna (dimer of trimer)

Chin, D.H.R. , Luo, D. , Luo, Y.B.

Primary Citation of Related Structures: 9TGO


Proteins
Molecule Chains Sequence Length Organism Sequence
Z22-VH A 121 Mus Musculus , Synthetic Construct KVQLVESGGGLVQPKGSLKLSCAASGFNFNTYAMNWVRQAPGKGLEWVARIRSKSNNYATYYADSMKDRFTISRDDSENMLYLQMINLKAEDTAMYYCVRQAYSNYGAMDYWGQGISVTVS
Z22-VH C 121 Mus Musculus , Synthetic Construct KVQLVESGGGLVQPKGSLKLSCAASGFNFNTYAMNWVRQAPGKGLEWVARIRSKSNNYATYYADSMKDRFTISRDDSENMLYLQMINLKAEDTAMYYCVRQAYSNYGAMDYWGQGISVTVS
Z22-VH D 121 Mus Musculus , Synthetic Construct KVQLVESGGGLVQPKGSLKLSCAASGFNFNTYAMNWVRQAPGKGLEWVARIRSKSNNYATYYADSMKDRFTISRDDSENMLYLQMINLKAEDTAMYYCVRQAYSNYGAMDYWGQGISVTVS
Z22-VH I 121 Mus Musculus , Synthetic Construct KVQLVESGGGLVQPKGSLKLSCAASGFNFNTYAMNWVRQAPGKGLEWVARIRSKSNNYATYYADSMKDRFTISRDDSENMLYLQMINLKAEDTAMYYCVRQAYSNYGAMDYWGQGISVTVS
Z22-VH K 121 Mus Musculus , Synthetic Construct KVQLVESGGGLVQPKGSLKLSCAASGFNFNTYAMNWVRQAPGKGLEWVARIRSKSNNYATYYADSMKDRFTISRDDSENMLYLQMINLKAEDTAMYYCVRQAYSNYGAMDYWGQGISVTVS
Z22-VH L 121 Mus Musculus , Synthetic Construct KVQLVESGGGLVQPKGSLKLSCAASGFNFNTYAMNWVRQAPGKGLEWVARIRSKSNNYATYYADSMKDRFTISRDDSENMLYLQMINLKAEDTAMYYCVRQAYSNYGAMDYWGQGISVTVS
Z22-VL B 106 Mus Musculus , Synthetic Construct DIQMTQTISSLSASLGDRVTISCSASQGISNYLNWYQQKPDGTVKLLIYYTSRLHSGVPSRFSGSGSGTDYSLTISNLEPEDIATYFCQQYSKFPFTFGSGTKLEI
Z22-VL E 106 Mus Musculus , Synthetic Construct DIQMTQTISSLSASLGDRVTISCSASQGISNYLNWYQQKPDGTVKLLIYYTSRLHSGVPSRFSGSGSGTDYSLTISNLEPEDIATYFCQQYSKFPFTFGSGTKLEI
Z22-VL F 106 Mus Musculus , Synthetic Construct DIQMTQTISSLSASLGDRVTISCSASQGISNYLNWYQQKPDGTVKLLIYYTSRLHSGVPSRFSGSGSGTDYSLTISNLEPEDIATYFCQQYSKFPFTFGSGTKLEI
Z22-VL J 106 Mus Musculus , Synthetic Construct DIQMTQTISSLSASLGDRVTISCSASQGISNYLNWYQQKPDGTVKLLIYYTSRLHSGVPSRFSGSGSGTDYSLTISNLEPEDIATYFCQQYSKFPFTFGSGTKLEI
Z22-VL M 106 Mus Musculus , Synthetic Construct DIQMTQTISSLSASLGDRVTISCSASQGISNYLNWYQQKPDGTVKLLIYYTSRLHSGVPSRFSGSGSGTDYSLTISNLEPEDIATYFCQQYSKFPFTFGSGTKLEI
Z22-VL N 106 Mus Musculus , Synthetic Construct DIQMTQTISSLSASLGDRVTISCSASQGISNYLNWYQQKPDGTVKLLIYYTSRLHSGVPSRFSGSGSGTDYSLTISNLEPEDIATYFCQQYSKFPFTFGSGTKLEI

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
DNA (5'-D(P*CP*GP*CP*GP*CP*GP*CP*GP*CP*GP*CP*G)-3') o 12 NA CGCGCGCGCGCG
DNA (5'-D(P*CP*GP*CP*GP*CP*GP*CP*GP*CP*GP*CP*G)-3') p 12 NA CGCGCGCGCGCG
DNA (5'-D(P*CP*GP*CP*GP*CP*GP*CP*GP*CP*GP*CP*G)-3') s 12 NA CGCGCGCGCGCG
DNA (5'-D(P*CP*GP*CP*GP*CP*GP*CP*GP*CP*GP*CP*G)-3') t 12 NA CGCGCGCGCGCG
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2025-12-02
Deposition Author(s): Chin, D.H.R. , Luo, D. , Luo, Y.B.