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FASTA Sequence PDB Format mmCIF Format
FASTA Sequence PDB Format PDB Format(gz) PDBx/mmCIF Format PDBx/mmCIF Format(gz) PDBML/XML Format Validation Full PDF Validation CIF

9TGN

Cryo-em structure of z-dna binding antibody z-d11 in complex with left-handed z-dna

PDB DOI: 10.2210/pdb9tgn/pdb

Classification: DNA BINDING PROTEIN
Organism(s): Mus Musculus , Synthetic Construct

Deposited: 2025-12-02
Deposition Author(s): Chin, D.H.R. , Luo, D. , Luo, Y.B.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.55 Å

9tgn
Literature

Cryo-em structure of z-dna binding antibody z-d11 in complex with left-handed z-dna

Chin, D.H.R. , Luo, D. , Luo, Y.B.

Primary Citation of Related Structures: 9TGN


Proteins
Molecule Chains Sequence Length Organism Sequence
ZD11-VL A 109 Mus Musculus , Synthetic Construct DIQMTQTTSSLSASLGDRVTINCRASQDISNYLNWYQQKPDGTVKLLIYYTSRLHSGVPSRFSGSGSGTDFSLTISYLEQEDIATYFCQQGKTLPFTFGAGTKLELKRA
ZD11-VL C 109 Mus Musculus , Synthetic Construct DIQMTQTTSSLSASLGDRVTINCRASQDISNYLNWYQQKPDGTVKLLIYYTSRLHSGVPSRFSGSGSGTDFSLTISYLEQEDIATYFCQQGKTLPFTFGAGTKLELKRA
ZD11-VL E 109 Mus Musculus , Synthetic Construct DIQMTQTTSSLSASLGDRVTINCRASQDISNYLNWYQQKPDGTVKLLIYYTSRLHSGVPSRFSGSGSGTDFSLTISYLEQEDIATYFCQQGKTLPFTFGAGTKLELKRA
ZD11-VL G 109 Mus Musculus , Synthetic Construct DIQMTQTTSSLSASLGDRVTINCRASQDISNYLNWYQQKPDGTVKLLIYYTSRLHSGVPSRFSGSGSGTDFSLTISYLEQEDIATYFCQQGKTLPFTFGAGTKLELKRA
ZD11-VL I 109 Mus Musculus , Synthetic Construct DIQMTQTTSSLSASLGDRVTINCRASQDISNYLNWYQQKPDGTVKLLIYYTSRLHSGVPSRFSGSGSGTDFSLTISYLEQEDIATYFCQQGKTLPFTFGAGTKLELKRA
ZD11-VL K 109 Mus Musculus , Synthetic Construct DIQMTQTTSSLSASLGDRVTINCRASQDISNYLNWYQQKPDGTVKLLIYYTSRLHSGVPSRFSGSGSGTDFSLTISYLEQEDIATYFCQQGKTLPFTFGAGTKLELKRA
ZD11-VH B 123 Mus Musculus , Synthetic Construct EVQLVETGGGLVQPKGSLKLSCAASGFTFNTNAMNWVRQAPGKGLEWVARIRSKSNNYATYYADSVKDRFTISRDDSQSMLYLQMNNLKTEDTAMYYCVRGYVNYYYVMDYWGQGTSVTVSSA
ZD11-VH D 123 Mus Musculus , Synthetic Construct EVQLVETGGGLVQPKGSLKLSCAASGFTFNTNAMNWVRQAPGKGLEWVARIRSKSNNYATYYADSVKDRFTISRDDSQSMLYLQMNNLKTEDTAMYYCVRGYVNYYYVMDYWGQGTSVTVSSA
ZD11-VH F 123 Mus Musculus , Synthetic Construct EVQLVETGGGLVQPKGSLKLSCAASGFTFNTNAMNWVRQAPGKGLEWVARIRSKSNNYATYYADSVKDRFTISRDDSQSMLYLQMNNLKTEDTAMYYCVRGYVNYYYVMDYWGQGTSVTVSSA
ZD11-VH H 123 Mus Musculus , Synthetic Construct EVQLVETGGGLVQPKGSLKLSCAASGFTFNTNAMNWVRQAPGKGLEWVARIRSKSNNYATYYADSVKDRFTISRDDSQSMLYLQMNNLKTEDTAMYYCVRGYVNYYYVMDYWGQGTSVTVSSA
ZD11-VH J 123 Mus Musculus , Synthetic Construct EVQLVETGGGLVQPKGSLKLSCAASGFTFNTNAMNWVRQAPGKGLEWVARIRSKSNNYATYYADSVKDRFTISRDDSQSMLYLQMNNLKTEDTAMYYCVRGYVNYYYVMDYWGQGTSVTVSSA
ZD11-VH L 123 Mus Musculus , Synthetic Construct EVQLVETGGGLVQPKGSLKLSCAASGFTFNTNAMNWVRQAPGKGLEWVARIRSKSNNYATYYADSVKDRFTISRDDSQSMLYLQMNNLKTEDTAMYYCVRGYVNYYYVMDYWGQGTSVTVSSA

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
DNA (5'-D(*CP*GP*CP*GP*CP*GP*CP*GP*CP*GP*CP*G)-3') m 12 NA CGCGCGCGCGCG
DNA (5'-D(*CP*GP*CP*GP*CP*GP*CP*GP*CP*GP*CP*G)-3') n 12 NA CGCGCGCGCGCG
DNA (5'-D(*CP*GP*CP*GP*CP*GP*CP*GP*CP*GP*CP*G)-3') o 12 NA CGCGCGCGCGCG
DNA (5'-D(*CP*GP*CP*GP*CP*GP*CP*GP*CP*GP*CP*G)-3') p 12 NA CGCGCGCGCGCG
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2025-12-02
Deposition Author(s): Chin, D.H.R. , Luo, D. , Luo, Y.B.