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9SAP

Cryo-em structure of sars cov-2 rdrp wild-type in complex with 20-40mer rna incorporating remdesivir

PDB DOI: 10.2210/pdb9sap/pdb

Classification: VIRAL PROTEIN
Organism(s): Severe Acute Respiratory Syndrome Coronavirus 2 , Synthetic Construct

Deposited: 2025-08-07
Deposition Author(s): Das, K. , Oliva, M.F.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.9 Å

9sap
Literature

Cryo-em structure of sars cov-2 rdrp wild-type in complex with 20-40mer rna incorporating remdesivir

Das, K. , Oliva, M.F.

Primary Citation of Related Structures: 9SAP


Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
RNA primer strand (25-MER) p 25 NA GUCAUUCUCCUAAGAAGCUAUUXXX
RNA template strand (40-MER) t 40 NA CUAUCCCCAUGUGAUUUUAAUAGCUUCUUAGGAGAAUGAC

Proteins
Molecule Chains Sequence Length Organism Sequence
RNA-directed RNA polymerase nsp12 A 928 Severe Acute Respiratory Syndrome Coronavirus 2 , Synthetic Construct QSFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKDEDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLTKYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVRQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSLLMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFYDFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHMLDMYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ
Non-structural protein 8 B 198 Severe Acute Respiratory Syndrome Coronavirus 2 , Synthetic Construct AIASEFSSLPSYAAFATAQEAYEQAVANGDSEVVLKKLKKSLNVAKSEFDRDAAMQRKLEKMADQAMTQMYKQARSEDKRAKVTSAMQTMLFTMLRKLDNDALNNIINNARDGCVPLNIIPLTTAAKLMVVIPDYNTYKNTCDGTTFTYASALWEIQQVVDADSKIVQLSEISMDNSPNLAWPLIVTALRANSAVKLQ
Non-structural protein 7 C 83 Severe Acute Respiratory Syndrome Coronavirus 2 , Synthetic Construct SKMSDVKCTSVVLLSVLQQLRVESSSKLWAQCVQLHNDILLAKDTTEAFEKMVSLLSVLLSMQGAVDINKLCEEMLDNRATLQ
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2025-08-07
Deposition Author(s): Das, K. , Oliva, M.F.