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9S60

Structural and proteomics analysis of the mouse cathepsin b - darpin 4m3 complex reveals determinants of species - specific binding

PDB DOI: 10.2210/pdb9s60/pdb

Classification: HYDROLASE
Organism(s): Mus Musculus , Synthetic Construct

Deposited: 2025-07-30
Deposition Author(s): Novak, M. , Turk, B. , Turk, D. , Tusar, L. , Usenik, A. , Vasiljeva, O. , Zaric, M.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.69 Å

9s60
Literature

Structural and proteomics analysis of the mouse cathepsin b - darpin 4m3 complex reveals determinants of species - specific binding

Novak, M. , Turk, B. , Turk, D. , Tusar, L. , Usenik, A. , Vasiljeva, O. , Zaric, M.

Primary Citation of Related Structures: 9S60


Proteins
Molecule Chains Sequence Length Organism Sequence
Cathepsin B A 254 Mus Musculus , Synthetic Construct LPETFDAREQWSNCPTIGQIRDQGSCGSCWAFGAVEAISDRTCIHTNGRVNVEVSAEDLLTCCGIQCGDGCNGGYPSGAWSFWTKKGLVSGGVYNSHVGCLPYTIPPCEHHVNGSRPPCTGEGDTPRCNKSCEAGYSPSYKEDKHFGYTSYSVSNSVKEIMAEIYKNGPVEGAFTVFSDFLTYKSGVYKHEAGDMMGGHAIRILGWGVENGVPYWLAANSWNLDWGDNGFFKILRGENHCGIESEIVAGIPRTD
Cathepsin B A2 254 Mus Musculus , Synthetic Construct LPETFDAREQWSNCPTIGQIRDQGSCGSCWAFGAVEAISDRTCIHTNGRVNVEVSAEDLLTCCGIQCGDGCNGGYPSGAWSFWTKKGLVSGGVYNSHVGCLPYTIPPCEHHVNGSRPPCTGEGDTPRCNKSCEAGYSPSYKEDKHFGYTSYSVSNSVKEIMAEIYKNGPVEGAFTVFSDFLTYKSGVYKHEAGDMMGGHAIRILGWGVENGVPYWLAANSWNLDWGDNGFFKILRGENHCGIESEIVAGIPRTD
DARPin 4m3 B 177 Mus Musculus , Synthetic Construct MDLGKKLLDAASAGQDDEVRILMANGADVNASDAHGRTPLHAAAWSGHLEIVDVLLAHGADVNASDKYGYTPLHLAASYGHLEIVDVLLANGADVNASSKYGNTPLHVAATSGHLEIVDVLLAHGADVNANTAAGKTPFDLAIDNGNEDIAEVLQKAAAAALEVLFQGPLEHHHHHH
DARPin 4m3 B2 177 Mus Musculus , Synthetic Construct MDLGKKLLDAASAGQDDEVRILMANGADVNASDAHGRTPLHAAAWSGHLEIVDVLLAHGADVNASDKYGYTPLHLAASYGHLEIVDVLLANGADVNASSKYGNTPLHVAATSGHLEIVDVLLAHGADVNANTAAGKTPFDLAIDNGNEDIAEVLQKAAAAALEVLFQGPLEHHHHHH
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2025-07-30
Deposition Author(s): Novak, M. , Turk, B. , Turk, D. , Tusar, L. , Usenik, A. , Vasiljeva, O. , Zaric, M.