9RN6
Crystal structure of a protein mimic of sars-cov-2 spike's hr1 domain in complex with two nanobodies bound to different epitopes
PDB DOI: 10.2210/pdb9rn6/pdb
Classification: VIRAL PROTEIN Organism(s): Severe Acute Respiratory Syndrome Coronavirus 2 , Vicugna Pacos
Deposited: 2025-06-19 Deposition Author(s): Camara-Artigas, A. , Conejero-Lara, F. , Gavira, J.A. , Polo-Megias, D. , Salinas-Garcia, M.C.
Experimental Data Snapshot
Method: X-RAY DIFFRACTION Resolution: 2.4 Å
Crystal structure of a protein mimic of sars-cov-2 spike's hr1 domain in complex with two nanobodies bound to different epitopes
Camara-Artigas, A. , Conejero-Lara, F. , Gavira, J.A. , Polo-Megias, D. , Salinas-Garcia, M.C.
Primary Citation of Related Structures: 9RN6
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| Spike protein S2',Chimeric protein mimic of SARS-CoV-2 Spike HR1 | A | 241 | Severe Acute Respiratory Syndrome Coronavirus 2 , Vicugna Pacos | MDVLYENQKLIANKFNSAIGKIQDSLSSTASELGKLQDEVNQNAQDLNTLVKQLSSNFGRISSELNDILSRLDKGEPAKDLRSDIDNLESKIAGFNSSLQKVLTNLAQKNQNVEDKLKGLESRTSSLEKQIKGIASNFQNEILKQREYLVNKGSGNVLYENQKLIENQFNSAIGKIQDSLSSTKSALGKLKDVVNQNKQALNTLVKQLSSNFGAISSVLNDIKSRLDKVEGGGGSHHHHHH |
| Nanobody NB278 | B | 123 | Severe Acute Respiratory Syndrome Coronavirus 2 , Vicugna Pacos | QVQLQESGGGLVQAGGSLRLSCAASGIAFSNNAMGWYRQAPGKQRELVANIITFGNTYYTDSVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCHTYGDSPERGYWGQGTQVTVSSHHHHHH |
| Nanobody NB184 | C | 138 | Severe Acute Respiratory Syndrome Coronavirus 2 , Vicugna Pacos | QVQLQESGGGLVHPGQSLTLSCAPSGRTFSNYDIGWFRQAPGKEREFVADIRLNSGSTYYADSVKGRFTISRDNVKNTVYLQMNSLKPEDTAVYYCAARSPGGILYDYWGQGTQVTVSSAAAYPYDVPDYGSHHHHHH |
Experimental Data
Method: X-RAY DIFFRACTION
Deposited Date: 2025-06-19 Deposition Author(s): Camara-Artigas, A. , Conejero-Lara, F. , Gavira, J.A. , Polo-Megias, D. , Salinas-Garcia, M.C.