9RCE
Cryo-em structure of a contractile injection system in salmonella enterica subspecies salamae, the baseplate portion in extended state.
PDB DOI: 10.2210/pdb9rce/pdb
Classification: CONTRACTILE PROTEIN Organism(s): Salmonella Enterica Subsp. Salamae
Deposited: 2025-05-28 Deposition Author(s): Ejaz, R.N. , Siborova, M. , Sofos, N.H. , Taylor, N.M.I. , Tillmann, H.P.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 2.86 Å
Cryo-em structure of a contractile injection system in salmonella enterica subspecies salamae, the baseplate portion in extended state.
Ejaz, R.N. , Siborova, M. , Sofos, N.H. , Taylor, N.M.I. , Tillmann, H.P.
Primary Citation of Related Structures: 9RCE
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| Peptidoglycan-binding protein | H | 217 | Salmonella Enterica Subsp. Salamae | MEKITIKSITSKGTVAQTFSATLNPNSIKHNFGISYTDKGPQQQGDISPTTVFKGYESEKLDFELLFDGTGVTGSTSTNTVQKQLATLKKVTYAYNGEQHEPNPVVIAWGSSVNFQGRLTAISINYSLFDSSGNPLRATVSLSFAKYLTQQEKSALKKQSSPDLTHIIEFKAGDTLPMLCHKIYNDSSYYIDVARANNLVSARQITPGTKIYFPPLI |
| Peptidoglycan-binding protein | M | 217 | Salmonella Enterica Subsp. Salamae | MEKITIKSITSKGTVAQTFSATLNPNSIKHNFGISYTDKGPQQQGDISPTTVFKGYESEKLDFELLFDGTGVTGSTSTNTVQKQLATLKKVTYAYNGEQHEPNPVVIAWGSSVNFQGRLTAISINYSLFDSSGNPLRATVSLSFAKYLTQQEKSALKKQSSPDLTHIIEFKAGDTLPMLCHKIYNDSSYYIDVARANNLVSARQITPGTKIYFPPLI |
| Conserved hypothetical phage tail region protein | I | 158 | Salmonella Enterica Subsp. Salamae | MVTAKGSGAAQGDGDWPLPAFYFSVSISGCADDTAFQEVSGLEFQIETEEYREGGNNLVYHLPKTIKSSNLTLKRAVTDKASRLLSWCLDILNDELSKPIQTKSVSINLLNEKGTTCKSWTASNAYPVKLKMAPFNSTQNDIAIEEIEICFHHLKRNL |
| Conserved hypothetical phage tail region protein | N | 158 | Salmonella Enterica Subsp. Salamae | MVTAKGSGAAQGDGDWPLPAFYFSVSISGCADDTAFQEVSGLEFQIETEEYREGGNNLVYHLPKTIKSSNLTLKRAVTDKASRLLSWCLDILNDELSKPIQTKSVSINLLNEKGTTCKSWTASNAYPVKLKMAPFNSTQNDIAIEEIEICFHHLKRNL |
| SalCis12 | B | 804 | Salmonella Enterica Subsp. Salamae | MPAHSDWGVNSTMSKTISKKDHNDNPNSFGHLYQLGLTYIQQLSGHLWTDYNTHDPGMTILEQVCYALTDLIYRCEFEVTDYLSEPSGNIDYRAHGLALAEDIIPSYPQQPKEYEAWLLARLPELDKVWLRNSENDSHLGIYTLNAQLNHFYALSQQRAVTGKHSVYTQQYAALHRIRHEYYRVRAVGEDLAAIELTGQHPLSLSAVIHISDDVADVTWLAACIYHRIHLWLESNQQNTPVNVIKESLLAEDGILQIDRLEFMQHSDNVSHDEQKAIDNIAPFSYLMLPEASAHSGIEIVQFQHPVNIDYADLAIQIEQIQYQQRNAQLKTPTPPALPVGQYVDFTRYESIQTLFPRNYHLAPGTPIQYHAQQQAQRHQLRSYLLLFDQLMANFCDDIAGLNALFSLSLTPEVTYHAHSLQDDEFYNIEKHYPRDANAGLERLRAQLDNYPERKNRIFNYLLALYSERYPDWLHRQFNPYFSTQTLEKEILKYKQAFILNIVTMTNGRGIGDNLLQPEHQGGYCQRLALLLGLFPSVDAAKGNVRTFARYSLNLVSDQDYFHSDTGRKALWLTTLEAQTSLQPIEENALTGYPKESDIHDTLLTAPLFREKILPDALLQFGIDNHRYRLLSRQNHDVHQLFFHVDIDGHKRWFHIASHSDKQALILLCHQLQRWLVQLNRDSEELYVVEPILLRTEATSASLSDYANRVILVLPGYTARFSNLRFREQVEQLIVENSPAHLLTQCLWLDFAMFNQFETLYTQWRQAKSNALQHKERQPECDATAQRLYLFLQRASIGADGVESQ |
| SalCis12 | J | 804 | Salmonella Enterica Subsp. Salamae | MPAHSDWGVNSTMSKTISKKDHNDNPNSFGHLYQLGLTYIQQLSGHLWTDYNTHDPGMTILEQVCYALTDLIYRCEFEVTDYLSEPSGNIDYRAHGLALAEDIIPSYPQQPKEYEAWLLARLPELDKVWLRNSENDSHLGIYTLNAQLNHFYALSQQRAVTGKHSVYTQQYAALHRIRHEYYRVRAVGEDLAAIELTGQHPLSLSAVIHISDDVADVTWLAACIYHRIHLWLESNQQNTPVNVIKESLLAEDGILQIDRLEFMQHSDNVSHDEQKAIDNIAPFSYLMLPEASAHSGIEIVQFQHPVNIDYADLAIQIEQIQYQQRNAQLKTPTPPALPVGQYVDFTRYESIQTLFPRNYHLAPGTPIQYHAQQQAQRHQLRSYLLLFDQLMANFCDDIAGLNALFSLSLTPEVTYHAHSLQDDEFYNIEKHYPRDANAGLERLRAQLDNYPERKNRIFNYLLALYSERYPDWLHRQFNPYFSTQTLEKEILKYKQAFILNIVTMTNGRGIGDNLLQPEHQGGYCQRLALLLGLFPSVDAAKGNVRTFARYSLNLVSDQDYFHSDTGRKALWLTTLEAQTSLQPIEENALTGYPKESDIHDTLLTAPLFREKILPDALLQFGIDNHRYRLLSRQNHDVHQLFFHVDIDGHKRWFHIASHSDKQALILLCHQLQRWLVQLNRDSEELYVVEPILLRTEATSASLSDYANRVILVLPGYTARFSNLRFREQVEQLIVENSPAHLLTQCLWLDFAMFNQFETLYTQWRQAKSNALQHKERQPECDATAQRLYLFLQRASIGADGVESQ |
| SalCis10 | C | 99 | Salmonella Enterica Subsp. Salamae | MPFAARITDLQMCPMSTPGLPPIPHVGGPIIGPGVPTVLIGSLPAAVVGDSCVCVGPPSTIVKGSATVLIGGKPAARMGDTTSHGGSITIGCPTVIIGG |
| GPW/gp25 family protein | K | 149 | Salmonella Enterica Subsp. Salamae | MANDNTFLGTGWAFPPRFTGPNHQVVMSSDMQDIEQSLTLLLSTTPGERLMTPDFGCRINQFVFEELTQTVLTQLSSEIRHAILFFESRIDVEDVHFLPEPLSGKLLIQIDYSVITTNTRSNMVYPFYLNEGTLISPQLLPLANEWDIA |
| Phage tail sheath family protein | D | 519 | Salmonella Enterica Subsp. Salamae | MGVMKTPGVYIVEQNAFPNSVVEVATAVPAFIGYTEKADNGGKSLSNKGWRITSMSEYRQYFGGEPQHLFEISEISTTSNANIREAFKQSGKTYQITQSNTRHHLYYSMLFFFQNGGGPCYIVSVGNYSDDIDAAVLKGGILPLIKEAEPTMLLIPEAIQLAEDDCINVEQAMLGHCGGKMKNRVAILDVWNGYKDRQHPDGDCVESFRSKLGTHYLDYAAAYYPWLNTSIVQDSDVSFLNISNIDKLAELLSGEVALMFSDLEGLSEEELSTGGNKLRATRKQAMLDEIAKLSAEISRPDAVLLHKILSNMSPLYQTIMADIKFQQNILPPSSAMAGIYTMVDNSRGVWKAPANVSVNAVVSPTVNISDDEQEDLNVTTQGKSINAIRPFIGEGTLVWGARTLDGNSVDWRYINVRRTMIMLEESIKLASKAYVFEPNVANTWVSMESMLSNFLYGIWKRGGLAGSTPGEAYNVSVGLGKTMTSNDILEGILRITVLVAMVRPAEFIEITFQQKMQES |
| Phage tail sheath family protein | L | 519 | Salmonella Enterica Subsp. Salamae | MGVMKTPGVYIVEQNAFPNSVVEVATAVPAFIGYTEKADNGGKSLSNKGWRITSMSEYRQYFGGEPQHLFEISEISTTSNANIREAFKQSGKTYQITQSNTRHHLYYSMLFFFQNGGGPCYIVSVGNYSDDIDAAVLKGGILPLIKEAEPTMLLIPEAIQLAEDDCINVEQAMLGHCGGKMKNRVAILDVWNGYKDRQHPDGDCVESFRSKLGTHYLDYAAAYYPWLNTSIVQDSDVSFLNISNIDKLAELLSGEVALMFSDLEGLSEEELSTGGNKLRATRKQAMLDEIAKLSAEISRPDAVLLHKILSNMSPLYQTIMADIKFQQNILPPSSAMAGIYTMVDNSRGVWKAPANVSVNAVVSPTVNISDDEQEDLNVTTQGKSINAIRPFIGEGTLVWGARTLDGNSVDWRYINVRRTMIMLEESIKLASKAYVFEPNVANTWVSMESMLSNFLYGIWKRGGLAGSTPGEAYNVSVGLGKTMTSNDILEGILRITVLVAMVRPAEFIEITFQQKMQES |
| SalCis6 | E | 56 | Salmonella Enterica Subsp. Salamae | VPLEIKQLVIKSQTINDDNKSPSFGSDWPGIESEESVSAKVIPYPFMPSPDEVRER |
| Type VI secretion system tip protein VgrG | F | 597 | Salmonella Enterica Subsp. Salamae | MAISPLSNNSTGVTTYTIKVGGKAIDSAIGVIAIHIHYQVNHIATAEITISDGDMPTQRFDISDADTFKPGSTISISAGYASDEQTIFDGIIISHGIEIAANNSSSLSVICKDQAVAMTIAKHSQCFLGKSDSKIISTLLANYPNITASVGRITDPHSELVQFNSTDWDFILTRAEANGFVVTNQSNKVTVDKPAISNAADLVVTYGTDLISFSAKVDARNQLKSVTATAWDPAKQSMVTGTGPAQSISGQGNLTSSELAKVLGISDYTLQTASTLSTDSLTRWADGQQVKAMLSKVRGSVTFQGNASATINSLIELAGVGERYNGSHYISGVHHSIEKGQWITTAELGMSPMWSADHRDIGAPPASGYLPPVDGLQIGVVTKLDGDPESNYRIQIKIPTLNSEANVIWARLASYYASSGFGNFFIPEVGDEVIVGCINQDPSNPIILGSLYSSKNKMPEEMTSDNYIKTLVTKSKMKIIFDDENSVMTLKTPNGNTVVISDKNKSITLADQNSNTICMDKNGIAITSSKDVMISAKGGVNISSTRDTIVKATGDAKISGLNISAQANTGLTLKGTATAELSCSGITTVKGALVKIN |
| Baseplate protein J-like domain-containing protein | A | 1323 | Salmonella Enterica Subsp. Salamae | MTSRQQRQDEAINSSLFHPHELSFEQLVGWAHQFAQQLPFRNLQDQADGHWGNLFQKSEIVVCAAISTSDTKHIQRQFKQALAHDENVTVEFLLILLKRLQAWYQHLPGAPETAYQFKYYLLHEYQRHLSLPLSLVICRLPEQFRHSVQELDPLWNLDQHTLDTASPVLQHSSFTEQMRHCFAKIVFVIEQIKKQSQQVLQAALMHQENNPQQALYFAFLKLFERAQQSLNQFTEKHLQFYYRQVLQQEKQSARENAVYLKLSLNHPTSSSIQFEQGAKFSPGDDPDFKPIAYRSRYPIEVTDAEVSHVFNLTLQRDPLVSPEKESGLVCGVSGQRVQITAGATGDDFPKAQQFNIFNNKYKTEDSTQPMGLIISDPLFSMQQGKRVIEIIVHLKEVRSSIVAQELLVVDDNNKTSAALTHIFAQLLSLHVHLFEDWAARITASGLTKQISQEQLSQFRQLRPSQRVWVAYKLFYLQTLQYICSTPEKGMQYGLSKIDLLFRIVGQMVSRRCLYTSAWLTKTDISTALSGLKSILVADPTAYTTIEELLSHSTTAAFYQIFQGGFDIEATTENGWELIDNVEIYPCPPQECQIGFKVKCHIDTGFAPIIPRLAHLPHSASLKITLKRQSNCFPYAIFRDFELSKLAMSTQVCGVTQLQLFNPEGQVDSSQPFFLFGSQPYMDAYVVLANEEIARKSISQLSLHLDWGNLPRGSDGFKQHYAEYHYPYTNASFQMRAEVLNNGRWVEFGPTGFSLFTPASGALRHDSHLHFLNMRNGYTPVTRPWPKTPYSNQSGLRNGLFKLLLTGPEPAFGHKDYAPLLSDTLTYNVTKKHKKTLPNQPYTPLVTHISIDYSAESTIDLLSVDRRSQSEIIHLYPFGENIIYPPKQTSPVHRPRFFPNYKEDSHCFIGITARELSGYLNIFFVFDGSARLVMPYPSTSYRWYYLVDNEWQALNPHQIIHDTTLNFLTTGIVTLDLPSEINTDHSVMPSGLFWLRVSTNKGIDRYPDCLHVATHVVKVTGKGVPLADDGITPLSFSSWRSTPRKANLAAIAQLNAMIRIPDIESEQHFQMRVSENLRHKGKALTPWDYEHLILENFPEVGSVHCFPTRSYYSLNQEPGRVLIIVTPLNTDCDHSLCSPKQLDSSYLLAIRRFLLSVSRSHVQIEVRNPGYEKIQIRCKVTLKEGVSHGPALRRLEYAIKAQLCPWEADTLNTGPGFCLSLEKLSAFILKQKNVVKVSALSALKISLDENTEYVLQDSAATSQPIRAAYPWFLLIPEEHQYIQISPDNLSHKPVTVGIGELVIGEQFIVSTSPTSPPKGAQNNG |
| Baseplate protein J-like domain-containing protein | G | 1323 | Salmonella Enterica Subsp. Salamae | MTSRQQRQDEAINSSLFHPHELSFEQLVGWAHQFAQQLPFRNLQDQADGHWGNLFQKSEIVVCAAISTSDTKHIQRQFKQALAHDENVTVEFLLILLKRLQAWYQHLPGAPETAYQFKYYLLHEYQRHLSLPLSLVICRLPEQFRHSVQELDPLWNLDQHTLDTASPVLQHSSFTEQMRHCFAKIVFVIEQIKKQSQQVLQAALMHQENNPQQALYFAFLKLFERAQQSLNQFTEKHLQFYYRQVLQQEKQSARENAVYLKLSLNHPTSSSIQFEQGAKFSPGDDPDFKPIAYRSRYPIEVTDAEVSHVFNLTLQRDPLVSPEKESGLVCGVSGQRVQITAGATGDDFPKAQQFNIFNNKYKTEDSTQPMGLIISDPLFSMQQGKRVIEIIVHLKEVRSSIVAQELLVVDDNNKTSAALTHIFAQLLSLHVHLFEDWAARITASGLTKQISQEQLSQFRQLRPSQRVWVAYKLFYLQTLQYICSTPEKGMQYGLSKIDLLFRIVGQMVSRRCLYTSAWLTKTDISTALSGLKSILVADPTAYTTIEELLSHSTTAAFYQIFQGGFDIEATTENGWELIDNVEIYPCPPQECQIGFKVKCHIDTGFAPIIPRLAHLPHSASLKITLKRQSNCFPYAIFRDFELSKLAMSTQVCGVTQLQLFNPEGQVDSSQPFFLFGSQPYMDAYVVLANEEIARKSISQLSLHLDWGNLPRGSDGFKQHYAEYHYPYTNASFQMRAEVLNNGRWVEFGPTGFSLFTPASGALRHDSHLHFLNMRNGYTPVTRPWPKTPYSNQSGLRNGLFKLLLTGPEPAFGHKDYAPLLSDTLTYNVTKKHKKTLPNQPYTPLVTHISIDYSAESTIDLLSVDRRSQSEIIHLYPFGENIIYPPKQTSPVHRPRFFPNYKEDSHCFIGITARELSGYLNIFFVFDGSARLVMPYPSTSYRWYYLVDNEWQALNPHQIIHDTTLNFLTTGIVTLDLPSEINTDHSVMPSGLFWLRVSTNKGIDRYPDCLHVATHVVKVTGKGVPLADDGITPLSFSSWRSTPRKANLAAIAQLNAMIRIPDIESEQHFQMRVSENLRHKGKALTPWDYEHLILENFPEVGSVHCFPTRSYYSLNQEPGRVLIIVTPLNTDCDHSLCSPKQLDSSYLLAIRRFLLSVSRSHVQIEVRNPGYEKIQIRCKVTLKEGVSHGPALRRLEYAIKAQLCPWEADTLNTGPGFCLSLEKLSAFILKQKNVVKVSALSALKISLDENTEYVLQDSAATSQPIRAAYPWFLLIPEEHQYIQISPDNLSHKPVTVGIGELVIGEQFIVSTSPTSPPKGAQNNG |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2025-05-28 Deposition Author(s): Ejaz, R.N. , Siborova, M. , Sofos, N.H. , Taylor, N.M.I. , Tillmann, H.P.