9QT5
Structure of the 50s ribosomal subunit from the antibiotic-producing bacterium streptomyces fradiae
PDB DOI: 10.2210/pdb9qt5/pdb
Classification: RIBOSOME Organism(s): Streptomyces Fradiae Atcc 10745 = Dsm 40063
Deposited: 2025-04-07 Deposition Author(s): Ekemezie, C.L. , Melnikov, S.V.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 3.13 Å
Structure of the 50s ribosomal subunit from the antibiotic-producing bacterium streptomyces fradiae
Ekemezie, C.L. , Melnikov, S.V.
Primary Citation of Related Structures: 9QT5
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| Large ribosomal subunit protein uL16 | M | 139 | Streptomyces Fradiae Atcc 10745 = Dsm 40063 | MLIPRRVKHRKQHHPKRSGMSKGGTQVAFGEYGIQALTPAYVTNRQIEAARIAMTRHIKRGGKVWINIYPDRPLTKKPAETRMGSGKGSPEWWVANVKPGRVMFELSYPNEKIAREALTRAAHKLPMKCRIVRREAGEA |
| Large ribosomal subunit protein uL14 | K | 122 | Streptomyces Fradiae Atcc 10745 = Dsm 40063 | MIQQESRLRVADNTGAKEILCIRVLGGSGRRYAGIGDVIVATVKDAIPGGNVKKGDVVKAVIVRTVKERRRQDGSYIRFDENAAVILKNDGDPRGTRIFGPVGRELREKKFMKIISLAPEVL |
| Large ribosomal subunit protein uL18 | O | 127 | Streptomyces Fradiae Atcc 10745 = Dsm 40063 | MAYGVKIAKGKAYKGAALKRRHIRIRKKVSGTAERPRLVVTRSNRGITAQVIDDIAGHTVASASTLDASIRGGEGDKSAKAQQVGKLVAERAKAAGVEAVVFDRGGNRYAGRIAALADAAREAGLKF |
| Large ribosomal subunit protein uL15 | L | 151 | Streptomyces Fradiae Atcc 10745 = Dsm 40063 | MAENNPLKIHNLRPAPGAKTAKTRVGRGEASKGKTAGRGTKGTKARYQVPERFEGGQMPLHMRLPKLKGFKNPFKTEYQVVNLDKLASLYPEGGEVTVADLVAKGAVRKNQLVKVLGQGEVSVALQVTVDAVSGSAKEKITAAGGSVTELV |
| Large ribosomal subunit protein bL19 | P | 116 | Streptomyces Fradiae Atcc 10745 = Dsm 40063 | MSHVLDAVNAASLRSDVPAFRPGDTVNVHVRVIEGNRSRIQQFKGVVIRRQGSGVSETFTVRKVSFSVGVERTFPVHSPIFEKIELVTRGDVRRAKLYYLRELRGKAAKIKEKREN |
| Large ribosomal subunit protein bL20 | Q | 128 | Streptomyces Fradiae Atcc 10745 = Dsm 40063 | MARVKRAVNAHKKRRAILEQASGYRGQRSRLYRKAKEQVTHSLVYNYNDRKKRKGDFRQLWIQRINAAARANGITYNRFIQGLKAANVEVDRKILAELAVNDANAFAALVEVAQKALPSDVNAPKAAA |
| Large ribosomal subunit protein bL21 | R | 106 | Streptomyces Fradiae Atcc 10745 = Dsm 40063 | MYAIVRSGGRQHKVAVGDIVEVDKISTAKVGDTVELSTLLVVDGDAVTSDPWVLAGIKVQAEVVDHHKGAKIDILRYKNKTGYRRRQGHRQQYTAIKVTAIPTAAK |
| Large ribosomal subunit protein uL22 | S | 115 | Streptomyces Fradiae Atcc 10745 = Dsm 40063 | MEARAQARYIRVTPMKARRVVDLIRGMDATEAQAVLRFAPQAASVPVKKVLDSAIANAAHNYDHTDASSLFISEAFVDEGPTLKRFRPRAQGRAYRIRKRTSHITVVVSSKEGTR |
| Large ribosomal subunit protein uL23 | T | 107 | Streptomyces Fradiae Atcc 10745 = Dsm 40063 | MSEAVVTSKTFTDPRDILVKPVVSEKSYALLDENKYTFVVDPRANKTQIKQAVEAVFSVKVTGVNTINRQGKRKRTRTGYGKRANTKRAIVTLAEGNRIDIFGGPTA |
| Large ribosomal subunit protein uL24 | U | 107 | Streptomyces Fradiae Atcc 10745 = Dsm 40063 | MKIKKGDLVQVITGKDKGKQGKVIAAFPREDRVLVEGVNRVKKHTKANQPGRASQAGGIVTVEAPIHVSNVQLVVEKDGNKVVTRVGYRFDENGNKIRVAKRTGEDI |
| Large ribosomal subunit protein bL25 | V | 195 | Streptomyces Fradiae Atcc 10745 = Dsm 40063 | MSEVKITAETRSEFGKGAARRIRRENKVPGVLYGHGTDPVHLTLPGHDLMMALKTSNVLLSLDLDGKTELAIPKAVQRDPLKGFLEHVDLLLVKRGEQVNVEIPVVTEGELAPGGNLLEHVLNALPVEAEATHIPESLSVSVAGLEAGASVLAKDIALPKGVSLAVEADTVVLQVLAAQAEEPAEGAESAESAEA |
| Large ribosomal subunit protein bL27 | W | 84 | Streptomyces Fradiae Atcc 10745 = Dsm 40063 | MAHKKGASSTRNGRDSNAQRLGVKRFGGQVVNAGEILVRQRGTHFHPGAGVGRGGDDTLFALQAGSVQFGTFRGRKVVNIVPVA |
| Large ribosomal subunit protein bL28 | X | 61 | Streptomyces Fradiae Atcc 10745 = Dsm 40063 | MAANCDVCGKGPGFGNNISHSHRRTSRRWNPNIQRVRAVVGRTPKRLNVCTSCIKAGKVSR |
| Large ribosomal subunit protein uL29 | Y | 74 | Streptomyces Fradiae Atcc 10745 = Dsm 40063 | MSAGTKASELRELSNEELVGKLREAKEELFNLRFQAATGQLENHGRLKAVRKDIARIYTLMRERELGIETVESA |
| Large ribosomal subunit protein uL30 | Z | 60 | Streptomyces Fradiae Atcc 10745 = Dsm 40063 | MARLKITQTKSYIGSKQNHRDTLRSLGLKGINTQVVKEDRPEFRGMVHTVRHLVTVEEVD |
| Large ribosomal subunit protein bL32 | 3 | 57 | Streptomyces Fradiae Atcc 10745 = Dsm 40063 | MAVPKRKMSRSNTRHRRSQWKAAVPTLVSCERCQEPKQQHIACPSCGTYNKRQVLAV |
| Large ribosomal subunit protein bL33 | 4 | 54 | Streptomyces Fradiae Atcc 10745 = Dsm 40063 | MAATDVRPKITLACVECKERNYITKKNRRNNPDRLEMKKHCPRCNAHTAHRETR |
| Large ribosomal subunit protein bL34 | 5 | 45 | Streptomyces Fradiae Atcc 10745 = Dsm 40063 | MSKRTFQPNNRRRAKTHGFRLRMRTRAGRAILATRRSKGRARLSA |
| Large ribosomal subunit protein bL35 | 6 | 64 | Streptomyces Fradiae Atcc 10745 = Dsm 40063 | MPKNKTHSGAKKRFKITGSGKVLRERAGKRHLLEHKSSKLTRRLTGNAEMAPGDSAKIKKMLGI |
| Large ribosomal subunit protein bL36 | 7 | 37 | Streptomyces Fradiae Atcc 10745 = Dsm 40063 | MKVKPSVKKICDKCKVIRRHGRVMVICDNLRHKQRQG |
| Large ribosomal subunit protein bL17 | N | 164 | Streptomyces Fradiae Atcc 10745 = Dsm 40063 | MPKPAKGARLGGSAAHEKLLLANLAKSLFEHGRITTTEAKARRLRPVAERLITKAKKGDIHNRRLVLQTITDKGIVHTLFTEIAPRYAERPGGYTRITKIGNRRGDNAPMAVIELVEGEIAKKATVAEAEAATKRAVKEADEAAASEAPAEDTAEAPAEEKKEA |
| Large ribosomal subunit protein uL2 | B | 278 | Streptomyces Fradiae Atcc 10745 = Dsm 40063 | MGIRKYKPTTPGRRGSSVADFVEITRSTPEKSLVRPLHSKGGRNNTGRVTVRHQGGGHKRAYRVIDFRRHDKDGVPAKVAHIEYDPNRTARIALLHYADGEKRYIIAPRGLSQGDRIENGPGADIKPGNNLALRNIPVGTTIHAIELRPGGGAKFARSAGASVQLLAKEGSMAHLRMPSGEIRLVDVRCRATIGEVGNAEQSNINWGKAGRKRWLGVRPTVRGVAMNPVDHPHGGGEGKTSGGRHPVSPWGQKEGRTRSPKKASNKYIVRRRKTNKKR |
| Large ribosomal subunit protein uL3 | C | 214 | Streptomyces Fradiae Atcc 10745 = Dsm 40063 | MAKNIKGVLGEKLGMTQVWDENNRVVPVTVVKAGPCVVTQVRSNDTDGYESVQIAFGEIDPRKVNKPLKGHFAKADVTPRRHLVEIRTADASEYTLGQEITAAVFEAGVKVDVTGKSKGKGFAGVMKRHNFRGLGAGHGTQRKHRSPGSIGGCATPGRVFKGLRMAGRMGNERVTTQNLTVHAVDAEKGLLLIKGAVPGPNGGLVLVRTAAKGA |
| Large ribosomal subunit protein uL4 | D | 216 | Streptomyces Fradiae Atcc 10745 = Dsm 40063 | MSTIDILSPAGDKAGTVELPSEIFDAKTSVPLIHQVVVAQLAAARQGTHKTKTRGEVRGGGKKPYRQKGTGRARQGSTRAPQFAGGGVVHGPVPRDYSQRTPKKMKAAALRGALSDRARHSRIHVVTGVVEGEISTKAAKTLFGKISERKNLLLVVERSDEAAWLSARNLPQVHILEPGQLNTYDVLVSDDVVFTKAAFESFVSGPQTAETEGSDA |
| Large ribosomal subunit protein uL5 | E | 185 | Streptomyces Fradiae Atcc 10745 = Dsm 40063 | MATTTTPRLKTKYREEIVGKLRDEFSYENVMQVPGLVKIVVNMGVGDAARDSKLIEGAIRDLTTITGQKPAVTKARKSIAQFKLREGQPIGAHVTLRGDRMWEFLDRTLSLALPRIRDFRGLSPKQFDGRGNYTFGLTEQVMFHEIDQDKIDRVRGMDITVVTTATNDDEGRALLRHLGFPFKEN |
| Large ribosomal subunit protein uL6 | F | 179 | Streptomyces Fradiae Atcc 10745 = Dsm 40063 | MSRIGKLPITVPAGVDVTIDGRTVEVKGPKGTLTHTVAAPIEIVKGEDGVLNVTRPNDERQNKALHGLSRTLVANMITGVTQGYTKALEISGVGYRVAAKGSNLEFQLGYSHPILVEAPEGISFKVESPTKFSVEGIDKQKVGEVAANIRKLRKPDPYKAKGVKYAGEVIRRKVGKAGK |
| Large ribosomal subunit protein bL9 | G | 148 | Streptomyces Fradiae Atcc 10745 = Dsm 40063 | MKIILTHEVSGLGAAGDVVDVKDGYARNYLVPRGFAIRWTKGGEKDVAQIRRARKIHEIATIEQANQIKAQLESVKVRLAVRSGDAGRLFGSVTPADIASAIKSAGGPEVDKRRVELGSPIKTLGSHQVSVRLHPEVAAKLGVEVVAA |
| Large ribosomal subunit protein uL13 | J | 147 | Streptomyces Fradiae Atcc 10745 = Dsm 40063 | MRTYSPKPGDVTRQWHVIDAQDVVLGRLATTAATLLRGKHKPIYAPHVDAGDFVIIINADKVHLSGNKRTQKMAYRHSGYPGGLRSVRYDDLLANNPEKAVEKAVKGMLPKNSLGRQMLSKLKVYAGENHPHAAQQPVPFEITQVAQ |
| Nucleic Acids / Hybrid | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| 5S rRNA | 2 | 117 | NA | UUCGGUGGUCAUAGCGUUAGGGAAACGCCCGGUUACAUUCCGAACCCGGAAGCUAAGCCUUUCAGCGCCGAUGGUACUGCAGGGGGGACCCUGUGGGAGAGUAGGACGCCGCCGAAC |
| 23S rRNA | 1 | 3119 | NA | GGCCAAGUUUAUAAGGGCGCACGGUGGAUGCCUUGGCACCAGGAACCGAUGAAGGACGUGGGAGGCCGCGAUAGGCCCCGGGGAGCUGUCAACCGAGCUUUGAUCCGGGGGUGUCCGAAUGGGGAAACCCGGCAGUCGUCAUGGGCUGUCACCCACUGCUGAACACAUAGGCAGUGUGGAGGGAACGAGGGGAAGUGAAACAUCUCAGUACCCUCAGGAAGAGAAAACAACCGUGAUUCCGGGAGUAGUGGCGAGCGAAACCGGAUGAGGCCAAACCGUAUGCGUGUGAUACCCGGCAGGGGUUGCGCAUGCGGGGUUGUGGGAUCUCUCUUUCACGGUCUGCCGGCCGUGAGACGAGUCAGAAACCGUUGAUGUAGGCGAAGGACAUGCGAAAGGUCCGGCGUAGAGGGUAAGACCCCCGUAGCUGAAACAUUGACGGCUCGUUUGAGAGACACCCAAGUAGCACGGGGCCCGAGAAAUCCCGUGUGAAUCUGGCGGGACCACCCGCUAAGCCUAAAUAUUCCCUGGUGACCGAUAGCGGAUAGUACCGUGAGGGAAUGGUGAAAAGUACCGCGGGAGCGGAGUGAAAUAGUACCUGAAACCGUGUGCCUACAAGCCGUGGGAGCGUCGGACAUGCUUUGCAUGUCUCGUGACUGCGUGCCUUUUGAAGAAUGAGCCUGCGAGUUUGCGGUGCGUUGCGAGGUUAACCCGUGUGGGGAAGCCGUAGCGAAAGCGAGUCCGAAUAGGGCGAUCGAGUAGCGCGCUCAAGACCCGAAGCGGAGUGAUCUAGCCAUGGGCAGGUUGAAGCGGAGGUAAGACUUCGUGGAGGACCGAACCCACCAGGGUUGAAAACCUGGGGGAUGACCUGUGGUUAGGGGUGAAAGGCCAAUCAAACUCCGUGAUAGCUGGUUCUCCCCGAAAUGCAUUUAGGUGCAGCGUCGUGUGUUUCUUGCCGGAGGUAGAGCACUGGAUAGGCGAUGGGCCCUACCGGGUUACUGACCUUAGCCAAACUCCGAAUGCCGGUAAGUGAGAGCGCGGCAGUGAGACUGUGGGGGAUAAGCUCCAUGGUCGAGAGGGAAACAGCCCAGAGCAUCGACUAAGGCCCCUAAGCGUACGCUAAGUGGGAAAGGAUGUGGAGUCGCAGAGACAACCAGGAGGUUGGCUUAGAAGCAGCCACCCUUGAAAGAGUGCGUAAUAGCUCACUGGUCAAGUGAUUCCGCGCCGACAAUGUAGCGGGGCUCAAGCGUACCGCCGAAGUCGUGUCAUUGCAGCAUAAGCCCCAACGGGUGCUGUGAUGGGUAGGGGAGCGUCGUGUGCCGGGUGAAGCAGCCGCGGAAGCGAGUUGUGGACGGUUCACGAGUGAGAAUGCAGGCAUGAGUAGCGAUACACACGUGAGAAACGUGUGCGCCGAUUGACUAAGGGUUCCUGGGUCAAGCUGAUCUGCCCAGGGUAAGUCGGGACCUAAGGCGAGGCCGACAGGCGUAGUCGAUGGACAACCGGUUGAUAUUCCGGUACCCGCUUUGAAGCGCCAGCGCUGAACCCAGCGAUGCUAAGCCCGUGAAACCGCCGUGUGCGUCUUCGGACAAGCACGGAGUGGUGGAGCCGGUGGCCCAGACUGGUAGUAGGUGAGCGAUGGGGUGACGCAGGAAGGUAGUCCAGCCCGGGCGGUGGUUGUCCCGGGGUAAGGGUGUAGGCCGUGUGGUAGGCAAAUCCGUCACACGUUAAGGCUGAGACCUGAUGCCGAGCCGAUUGUGGUGAAGUGGAUGAUCCUAUGCUGUCGAGAAAAGCCUCUAGCGAGUUUCAUGGCGGCCCGUACCCUAAACCGACUCAGGUGGUCAGGUAGAGAAUACCGAGGCGUUCGGGUGAACUAUGGUUAAGGAACUCGGCAAAAUGCCCCCGUAACUUCGGGAGAAGGGGGGCCACUUCUGGUGAUCACUCUUGCAGUGUGAGCUGGGGGUGGCCGCAGAGACCAGCGAGAAGCGACUGUUUACUAAAAACACAGGUCCGUGCGAAGCCGUAAGGCGAUGUAUACGGACUGACGCCUGCCCGGUGCUGGAACGUUAAGGGGACCGGUUAGCUUGGAUUCGUCCGGGCGAAGCUGAGAACUUAAGCGCCAGUAAACGGCGGUGGUAACUAUAACCAUCCUAAGGUAGCGAAAUUCCUUGUCGGGUAAGUUCCGACCUGCACGAAUGGCGUAACGACUUCUCGACUGUCUCAACCAUAGGCCCGGUGAAAUUGCACUACGAGUAAAGAUGCUCGUUUCGCGCAGCAGGACGGAAAGACCCCGGGACCUUUACUACAGUUUGAUAUUGGUGUUCGGUUCGGCUUGUGUAGGAUAGGUGGGAGACUGUGAAACUGUGACGCCAGUCAUGGUGGAGUCGUCGUUGAAAUACCACUCUGGUCGUGCUGGAUGUCUAACCUGGGUCCGUGAUCCGGAUCAGGGACAGUGUCUGAUGGGUAGUUUAACUGGGGCGGUUGCCUCCUAAAGGGUAACGGAGGCGCCCAAAGGUUCCCUCAGCCUGGUUGGCAAUCAGGUGUUGAGUGUAAGUGCACAAGGGAGCUUGACUGUGAGACCGACGGGUCGAGCAGGGACGAAAGUCGGGACUAGUGAUCCGGCGGUGGCUUGUGGAAGCGCCGUCGCUCAACGGAUAAAAGGUACCCCGGGGAUAACAGGCUGAUCUUCCCCAAGAGUCCAUAUCGACGGGAUGGUUUGGCACCUCGAUGUCGGCUCGUCGCAUCCUGGGGCUGGAGUCGGUCCCAAGGGUUGGGCUGUUCGCCCAUUAAAGCGGUACGCGAGCUGGGUUUAGAACGUCGUGAGACAGUUCGGUCCCUAUCCGCUGCGCGCGCAGGAACAUUGAGAAGGGCUGUCCCUAGUACGAGAGGACCGGGACGGACGAACCUCUGGUGUGCCAGUUGUUCUGCCAAGGGCAUGGCUGGUUGGCUACGUUCGGGAGGGAUAACCGCUGAAAGCAUCUAAGCGGGAAGCCUGCUUCGAGAUGAGUGUUCCCACCUCCUUGAGAGGGUAAGGCUCCCAGUAGACGACUGGGUUGAUAGGCCGGAUAUGGAAGCCCAGUGAUGGGUGGAGUUGACCGGUACUAAUAGGCCGAGGGCUUGUCCUC |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2025-04-07 Deposition Author(s): Ekemezie, C.L. , Melnikov, S.V.