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FASTA Sequence PDB Format mmCIF Format
FASTA Sequence PDB Format PDB Format(gz) PDBx/mmCIF Format PDBx/mmCIF Format(gz) PDBML/XML Format Validation Full PDF Validation CIF

9QGN

Cryo-em structure of the plpvc1 cap, 6-fold symmetrized (c6), in extended state

PDB DOI: 10.2210/pdb9qgn/pdb

Classification: VIRUS LIKE PARTICLE
Organism(s): Photorhabdus Luminescens

Deposited: 2025-03-14
Deposition Author(s): Marin-Arraiza, L. , Taylor, N.M.I.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.46 Å

9qgn
Literature

Cryo-em structure of the plpvc1 cap, 6-fold symmetrized (c6), in extended state

Marin-Arraiza, L. , Taylor, N.M.I.

Primary Citation of Related Structures: 9QGN


Proteins
Molecule Chains Sequence Length Organism Sequence
DUF4255 domain-containing protein A 300 Photorhabdus Luminescens MTIIIASDNAIIEINQALNTILSQYLNITGQNIDIRFDLPEINSIQSEPTVSVFLYEIHEDLQLRSAESRRYNPSTNTLLPGWVNINCNYLITYWDASKPSSDSSSPDSQPNNQAAQVMTRILNALINNRQLTGLPGAYTRIIPQQENLNSLGNFWQALGNRPRLSLLYSITVPMKLKNIEDNVIPVSKISASVDQKPNLDNSQINQALIDKLCVELGGTEDVRLALAKVNLTTKPDTENNQNQENESVIVEVSGITSVTYLPQIKDTLTKWKSSQEAIVKINGVSIVVSKENADKLIGI
DUF4255 domain-containing protein B 300 Photorhabdus Luminescens MTIIIASDNAIIEINQALNTILSQYLNITGQNIDIRFDLPEINSIQSEPTVSVFLYEIHEDLQLRSAESRRYNPSTNTLLPGWVNINCNYLITYWDASKPSSDSSSPDSQPNNQAAQVMTRILNALINNRQLTGLPGAYTRIIPQQENLNSLGNFWQALGNRPRLSLLYSITVPMKLKNIEDNVIPVSKISASVDQKPNLDNSQINQALIDKLCVELGGTEDVRLALAKVNLTTKPDTENNQNQENESVIVEVSGITSVTYLPQIKDTLTKWKSSQEAIVKINGVSIVVSKENADKLIGI
DUF4255 domain-containing protein C 300 Photorhabdus Luminescens MTIIIASDNAIIEINQALNTILSQYLNITGQNIDIRFDLPEINSIQSEPTVSVFLYEIHEDLQLRSAESRRYNPSTNTLLPGWVNINCNYLITYWDASKPSSDSSSPDSQPNNQAAQVMTRILNALINNRQLTGLPGAYTRIIPQQENLNSLGNFWQALGNRPRLSLLYSITVPMKLKNIEDNVIPVSKISASVDQKPNLDNSQINQALIDKLCVELGGTEDVRLALAKVNLTTKPDTENNQNQENESVIVEVSGITSVTYLPQIKDTLTKWKSSQEAIVKINGVSIVVSKENADKLIGI
DUF4255 domain-containing protein D 300 Photorhabdus Luminescens MTIIIASDNAIIEINQALNTILSQYLNITGQNIDIRFDLPEINSIQSEPTVSVFLYEIHEDLQLRSAESRRYNPSTNTLLPGWVNINCNYLITYWDASKPSSDSSSPDSQPNNQAAQVMTRILNALINNRQLTGLPGAYTRIIPQQENLNSLGNFWQALGNRPRLSLLYSITVPMKLKNIEDNVIPVSKISASVDQKPNLDNSQINQALIDKLCVELGGTEDVRLALAKVNLTTKPDTENNQNQENESVIVEVSGITSVTYLPQIKDTLTKWKSSQEAIVKINGVSIVVSKENADKLIGI
DUF4255 domain-containing protein E 300 Photorhabdus Luminescens MTIIIASDNAIIEINQALNTILSQYLNITGQNIDIRFDLPEINSIQSEPTVSVFLYEIHEDLQLRSAESRRYNPSTNTLLPGWVNINCNYLITYWDASKPSSDSSSPDSQPNNQAAQVMTRILNALINNRQLTGLPGAYTRIIPQQENLNSLGNFWQALGNRPRLSLLYSITVPMKLKNIEDNVIPVSKISASVDQKPNLDNSQINQALIDKLCVELGGTEDVRLALAKVNLTTKPDTENNQNQENESVIVEVSGITSVTYLPQIKDTLTKWKSSQEAIVKINGVSIVVSKENADKLIGI
DUF4255 domain-containing protein F 300 Photorhabdus Luminescens MTIIIASDNAIIEINQALNTILSQYLNITGQNIDIRFDLPEINSIQSEPTVSVFLYEIHEDLQLRSAESRRYNPSTNTLLPGWVNINCNYLITYWDASKPSSDSSSPDSQPNNQAAQVMTRILNALINNRQLTGLPGAYTRIIPQQENLNSLGNFWQALGNRPRLSLLYSITVPMKLKNIEDNVIPVSKISASVDQKPNLDNSQINQALIDKLCVELGGTEDVRLALAKVNLTTKPDTENNQNQENESVIVEVSGITSVTYLPQIKDTLTKWKSSQEAIVKINGVSIVVSKENADKLIGI
Phage tail protein 1A 149 Photorhabdus Luminescens MAITPEQIAVEYPIPTYRFVVSVGDEQIPFNNVSGLDVHYDVIEYKDGIGNYYKMPGQRQSINITLRKGVFPGDTKLFDWINSIQLNQVEKKDIAISLTNEAGTEILMTWNVANAFPTSFTSPSFDATSNEIAVQEIALTADRVTIQAA
Phage tail protein 1B 149 Photorhabdus Luminescens MAITPEQIAVEYPIPTYRFVVSVGDEQIPFNNVSGLDVHYDVIEYKDGIGNYYKMPGQRQSINITLRKGVFPGDTKLFDWINSIQLNQVEKKDIAISLTNEAGTEILMTWNVANAFPTSFTSPSFDATSNEIAVQEIALTADRVTIQAA
Phage tail protein 1C 149 Photorhabdus Luminescens MAITPEQIAVEYPIPTYRFVVSVGDEQIPFNNVSGLDVHYDVIEYKDGIGNYYKMPGQRQSINITLRKGVFPGDTKLFDWINSIQLNQVEKKDIAISLTNEAGTEILMTWNVANAFPTSFTSPSFDATSNEIAVQEIALTADRVTIQAA
Phage tail protein 1D 149 Photorhabdus Luminescens MAITPEQIAVEYPIPTYRFVVSVGDEQIPFNNVSGLDVHYDVIEYKDGIGNYYKMPGQRQSINITLRKGVFPGDTKLFDWINSIQLNQVEKKDIAISLTNEAGTEILMTWNVANAFPTSFTSPSFDATSNEIAVQEIALTADRVTIQAA
Phage tail protein 1E 149 Photorhabdus Luminescens MAITPEQIAVEYPIPTYRFVVSVGDEQIPFNNVSGLDVHYDVIEYKDGIGNYYKMPGQRQSINITLRKGVFPGDTKLFDWINSIQLNQVEKKDIAISLTNEAGTEILMTWNVANAFPTSFTSPSFDATSNEIAVQEIALTADRVTIQAA
Phage tail protein 1F 149 Photorhabdus Luminescens MAITPEQIAVEYPIPTYRFVVSVGDEQIPFNNVSGLDVHYDVIEYKDGIGNYYKMPGQRQSINITLRKGVFPGDTKLFDWINSIQLNQVEKKDIAISLTNEAGTEILMTWNVANAFPTSFTSPSFDATSNEIAVQEIALTADRVTIQAA
Phage tail protein 1G 149 Photorhabdus Luminescens MAITPEQIAVEYPIPTYRFVVSVGDEQIPFNNVSGLDVHYDVIEYKDGIGNYYKMPGQRQSINITLRKGVFPGDTKLFDWINSIQLNQVEKKDIAISLTNEAGTEILMTWNVANAFPTSFTSPSFDATSNEIAVQEIALTADRVTIQAA
Phage tail protein 1H 149 Photorhabdus Luminescens MAITPEQIAVEYPIPTYRFVVSVGDEQIPFNNVSGLDVHYDVIEYKDGIGNYYKMPGQRQSINITLRKGVFPGDTKLFDWINSIQLNQVEKKDIAISLTNEAGTEILMTWNVANAFPTSFTSPSFDATSNEIAVQEIALTADRVTIQAA
Phage tail protein 1I 149 Photorhabdus Luminescens MAITPEQIAVEYPIPTYRFVVSVGDEQIPFNNVSGLDVHYDVIEYKDGIGNYYKMPGQRQSINITLRKGVFPGDTKLFDWINSIQLNQVEKKDIAISLTNEAGTEILMTWNVANAFPTSFTSPSFDATSNEIAVQEIALTADRVTIQAA
Phage tail protein 1J 149 Photorhabdus Luminescens MAITPEQIAVEYPIPTYRFVVSVGDEQIPFNNVSGLDVHYDVIEYKDGIGNYYKMPGQRQSINITLRKGVFPGDTKLFDWINSIQLNQVEKKDIAISLTNEAGTEILMTWNVANAFPTSFTSPSFDATSNEIAVQEIALTADRVTIQAA
Phage tail protein 1K 149 Photorhabdus Luminescens MAITPEQIAVEYPIPTYRFVVSVGDEQIPFNNVSGLDVHYDVIEYKDGIGNYYKMPGQRQSINITLRKGVFPGDTKLFDWINSIQLNQVEKKDIAISLTNEAGTEILMTWNVANAFPTSFTSPSFDATSNEIAVQEIALTADRVTIQAA
Phage tail protein 1L 149 Photorhabdus Luminescens MAITPEQIAVEYPIPTYRFVVSVGDEQIPFNNVSGLDVHYDVIEYKDGIGNYYKMPGQRQSINITLRKGVFPGDTKLFDWINSIQLNQVEKKDIAISLTNEAGTEILMTWNVANAFPTSFTSPSFDATSNEIAVQEIALTADRVTIQAA
Phage tail sheath family protein 2A 354 Photorhabdus Luminescens MTTITTYPGVYIEEDASLSLSVSSSATAVPVFAVAGDNPLISGKPYIRISNWLEYLTLKNEQFDPANTLDISLRAYFINGGGYCYLVQTTDLEKQVPKLDDVTLLVAAGENITTAVSTLCKPGKGLFAIFDGPTTELKSDGTSNSDYDPNPFAAVYYPWLTADWTTTIDIPPSAAIAGVYCSVDSTRGVWKAPANVPIQGGLQPKYPVTDDLQAQYNQGKALNMIRTFPKSGTLVWGARTLEDNDNWRYIPVRRLFNSAERDIKNAMSFAVFEPNSQPTWERVRSAVNNYLYSLWQQGGLAGNKPDDAYFVQIGKDITMTDDDIKQGKMIIKIGMAAVRPAEFIILQFTQNTAQ
Phage tail sheath family protein 2B 354 Photorhabdus Luminescens MTTITTYPGVYIEEDASLSLSVSSSATAVPVFAVAGDNPLISGKPYIRISNWLEYLTLKNEQFDPANTLDISLRAYFINGGGYCYLVQTTDLEKQVPKLDDVTLLVAAGENITTAVSTLCKPGKGLFAIFDGPTTELKSDGTSNSDYDPNPFAAVYYPWLTADWTTTIDIPPSAAIAGVYCSVDSTRGVWKAPANVPIQGGLQPKYPVTDDLQAQYNQGKALNMIRTFPKSGTLVWGARTLEDNDNWRYIPVRRLFNSAERDIKNAMSFAVFEPNSQPTWERVRSAVNNYLYSLWQQGGLAGNKPDDAYFVQIGKDITMTDDDIKQGKMIIKIGMAAVRPAEFIILQFTQNTAQ
Phage tail sheath family protein 2C 354 Photorhabdus Luminescens MTTITTYPGVYIEEDASLSLSVSSSATAVPVFAVAGDNPLISGKPYIRISNWLEYLTLKNEQFDPANTLDISLRAYFINGGGYCYLVQTTDLEKQVPKLDDVTLLVAAGENITTAVSTLCKPGKGLFAIFDGPTTELKSDGTSNSDYDPNPFAAVYYPWLTADWTTTIDIPPSAAIAGVYCSVDSTRGVWKAPANVPIQGGLQPKYPVTDDLQAQYNQGKALNMIRTFPKSGTLVWGARTLEDNDNWRYIPVRRLFNSAERDIKNAMSFAVFEPNSQPTWERVRSAVNNYLYSLWQQGGLAGNKPDDAYFVQIGKDITMTDDDIKQGKMIIKIGMAAVRPAEFIILQFTQNTAQ
Phage tail sheath family protein 2D 354 Photorhabdus Luminescens MTTITTYPGVYIEEDASLSLSVSSSATAVPVFAVAGDNPLISGKPYIRISNWLEYLTLKNEQFDPANTLDISLRAYFINGGGYCYLVQTTDLEKQVPKLDDVTLLVAAGENITTAVSTLCKPGKGLFAIFDGPTTELKSDGTSNSDYDPNPFAAVYYPWLTADWTTTIDIPPSAAIAGVYCSVDSTRGVWKAPANVPIQGGLQPKYPVTDDLQAQYNQGKALNMIRTFPKSGTLVWGARTLEDNDNWRYIPVRRLFNSAERDIKNAMSFAVFEPNSQPTWERVRSAVNNYLYSLWQQGGLAGNKPDDAYFVQIGKDITMTDDDIKQGKMIIKIGMAAVRPAEFIILQFTQNTAQ
Phage tail sheath family protein 2E 354 Photorhabdus Luminescens MTTITTYPGVYIEEDASLSLSVSSSATAVPVFAVAGDNPLISGKPYIRISNWLEYLTLKNEQFDPANTLDISLRAYFINGGGYCYLVQTTDLEKQVPKLDDVTLLVAAGENITTAVSTLCKPGKGLFAIFDGPTTELKSDGTSNSDYDPNPFAAVYYPWLTADWTTTIDIPPSAAIAGVYCSVDSTRGVWKAPANVPIQGGLQPKYPVTDDLQAQYNQGKALNMIRTFPKSGTLVWGARTLEDNDNWRYIPVRRLFNSAERDIKNAMSFAVFEPNSQPTWERVRSAVNNYLYSLWQQGGLAGNKPDDAYFVQIGKDITMTDDDIKQGKMIIKIGMAAVRPAEFIILQFTQNTAQ
Phage tail sheath family protein 2F 354 Photorhabdus Luminescens MTTITTYPGVYIEEDASLSLSVSSSATAVPVFAVAGDNPLISGKPYIRISNWLEYLTLKNEQFDPANTLDISLRAYFINGGGYCYLVQTTDLEKQVPKLDDVTLLVAAGENITTAVSTLCKPGKGLFAIFDGPTTELKSDGTSNSDYDPNPFAAVYYPWLTADWTTTIDIPPSAAIAGVYCSVDSTRGVWKAPANVPIQGGLQPKYPVTDDLQAQYNQGKALNMIRTFPKSGTLVWGARTLEDNDNWRYIPVRRLFNSAERDIKNAMSFAVFEPNSQPTWERVRSAVNNYLYSLWQQGGLAGNKPDDAYFVQIGKDITMTDDDIKQGKMIIKIGMAAVRPAEFIILQFTQNTAQ
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2025-03-14
Deposition Author(s): Marin-Arraiza, L. , Taylor, N.M.I.