9QBQ
Crystal structure of apo sparda complex from xanthobacter autotrophicus
PDB DOI: 10.2210/pdb9qbq/pdb
Classification: RNA BINDING PROTEIN Organism(s): Xanthobacter Autotrophicus Py2
Deposited: 2025-03-03 Deposition Author(s): Grazulis, S. , Manakova, E.N. , Zaremba, M.
Experimental Data Snapshot
Method: X-RAY DIFFRACTION Resolution: 3 Å
Crystal structure of apo sparda complex from xanthobacter autotrophicus
Grazulis, S. , Manakova, E.N. , Zaremba, M.
Primary Citation of Related Structures: 9QBQ
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| DUF4365 domain-containing protein | A | 458 | Xanthobacter Autotrophicus Py2 | MGGSHHHHHHGMASMSKRITDSQVLGELGETAIKKIVLETGFLYEQRGRLEAGTDGIIELRDPKSGAPLGKLLGVQVKSTESGQYVRENDNSFEYLLKPDDLKYWRTSNIPVIIVLWRKSDETAYWKDVSDCVRGEERRLKFDKGTDVFDPRSADRIGALTIDRRTPGVFLPPLNKGEDAIINLLRIRLPDEIFISTSPFGSGRDAVPELVKHGNVRFDWVIRKRRFVSFFDPREYGTRAIVDLDQVEAVDTKLIAFNDEQDDLNDTMDLLRRTVERQTATQLSFLRKDRLFHFKAVGVGKSRSYRYMSNVNETSAKVVSAYSSKKKDGWGYVRHHAARLRFERLADEWFLVIDPDFHFTTDGFQPHRYPEALLAGKKRLERNAAVRGQVTMWQHLLVESGKHEVGLFDADKPAPLLQFERLPVIQLSQAVPESSWNRTDPRAKEMEAQDLFEEGGVG |
| DUF4365 domain-containing protein | C | 458 | Xanthobacter Autotrophicus Py2 | MGGSHHHHHHGMASMSKRITDSQVLGELGETAIKKIVLETGFLYEQRGRLEAGTDGIIELRDPKSGAPLGKLLGVQVKSTESGQYVRENDNSFEYLLKPDDLKYWRTSNIPVIIVLWRKSDETAYWKDVSDCVRGEERRLKFDKGTDVFDPRSADRIGALTIDRRTPGVFLPPLNKGEDAIINLLRIRLPDEIFISTSPFGSGRDAVPELVKHGNVRFDWVIRKRRFVSFFDPREYGTRAIVDLDQVEAVDTKLIAFNDEQDDLNDTMDLLRRTVERQTATQLSFLRKDRLFHFKAVGVGKSRSYRYMSNVNETSAKVVSAYSSKKKDGWGYVRHHAARLRFERLADEWFLVIDPDFHFTTDGFQPHRYPEALLAGKKRLERNAAVRGQVTMWQHLLVESGKHEVGLFDADKPAPLLQFERLPVIQLSQAVPESSWNRTDPRAKEMEAQDLFEEGGVG |
| Protein argonaute | B | 482 | Xanthobacter Autotrophicus Py2 | MTFKAHVFDEPMLEFGDGGQHCDPRQGLREHGPLQPRSGDVIRVGVIGTDDTVAGFTEFLAETGRGIESGNKQLINLNPDFPGLGNQNPFRCKFEVPDGATVTISRRQVNDITGIGRHDEAVRHAVELISSQLSALVEGSAKPDVIVLALPIPLIEKLVNAKSEGEDSDDDVDGGDMLNFRDLLKAKTLHLPVPTQIVWPDTWDDAAKIPRKIKRDSNRQTQVKATRAWNLLNALFYKAGKVPWRLLPDQAEYRTSFLGIGFYRDLDGQQLWTSTAQMFDERGRGLILRGARAQTETRGRHPYLTAKDAEDLVVQSIAAYKAHHRHVPARLVVLKTSRFRSEEAEGIDAALGKSGIEMSDLVWVQESSPIAIFRDGNYPVLRGTFVDLDGKGLLYTRGSVPFYGTFPGLRVPRPLLLVPHENSDSTILTLAKDVLALTKVNWNTTQFDQKLPAPIKAAREVGRILKHVEFGTAVSSDFRRYT |
| Protein argonaute | D | 482 | Xanthobacter Autotrophicus Py2 | MTFKAHVFDEPMLEFGDGGQHCDPRQGLREHGPLQPRSGDVIRVGVIGTDDTVAGFTEFLAETGRGIESGNKQLINLNPDFPGLGNQNPFRCKFEVPDGATVTISRRQVNDITGIGRHDEAVRHAVELISSQLSALVEGSAKPDVIVLALPIPLIEKLVNAKSEGEDSDDDVDGGDMLNFRDLLKAKTLHLPVPTQIVWPDTWDDAAKIPRKIKRDSNRQTQVKATRAWNLLNALFYKAGKVPWRLLPDQAEYRTSFLGIGFYRDLDGQQLWTSTAQMFDERGRGLILRGARAQTETRGRHPYLTAKDAEDLVVQSIAAYKAHHRHVPARLVVLKTSRFRSEEAEGIDAALGKSGIEMSDLVWVQESSPIAIFRDGNYPVLRGTFVDLDGKGLLYTRGSVPFYGTFPGLRVPRPLLLVPHENSDSTILTLAKDVLALTKVNWNTTQFDQKLPAPIKAAREVGRILKHVEFGTAVSSDFRRYT |
Experimental Data
Method: X-RAY DIFFRACTION
Deposited Date: 2025-03-03 Deposition Author(s): Grazulis, S. , Manakova, E.N. , Zaremba, M.