9Q8N
Cryo-em structure of shigella flexneri lptde bound by a bicyclic peptide molecule (compound 16)
PDB DOI: 10.2210/pdb9q8n/pdb
Classification: MEMBRANE PROTEIN Organism(s): Shigella Flexneri , Synthetic Construct
Deposited: 2025-02-25 Deposition Author(s): Allyjaun, S. , Chirgadze, D.Y. , Dunbar, E. , Hardwick, S.W. , Hubbard, J. , Newman, H. , Van Den Berg, B.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 2.54 Å
Cryo-em structure of shigella flexneri lptde bound by a bicyclic peptide molecule (compound 16)
Allyjaun, S. , Chirgadze, D.Y. , Dunbar, E. , Hardwick, S.W. , Hubbard, J. , Newman, H. , Van Den Berg, B.
Primary Citation of Related Structures: 9Q8N
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| LPS-assembly protein LptD | A | 760 | Shigella Flexneri , Synthetic Construct | ADLASQCMLGVPSYDRPLVQGDTNDLPVTINADHAKGDYPDDAVFTGSVDIMQGNSRLQADEVQLHQKEAPGQPEPVRTVDALGNVHYDDNQVILKGPKGWANLNTKDTNVWEGDYQMVGRQGRGKADLMKQRGENRYTILDNGSFTSCLPGSDTWSVVGSEIIHDREEQVAEIWNARFKVGPVPIFYSPYLQLPVGDKRRSGFLIPNAKYTTTNYFEFYLPYYWNIAPNMDATITPHYMHRRGNIMWENEFRYLSQAGAGLMELDYLPSDKVYEDEHPNDDSSRRWLFYWNHSGVMDQVWRFNVDYTKVSDPSYFNDFDNKYGSSTDGYATQKFSVGYAVQNFNATVSTKQFQVFSEQNTSSYSAEPQLDVNYYQNDVGPFDTRIYGQAVHFVNTRDDMPEATRVHLEPTINLPLSNNWGSINTEAKFLATHYQQTNLDWYNSRNTTKLDESVNRVMPQFKVDGKMVFERDMEMLAPGYTQTLEPRAQYLYVPYRDQSDIYNYDSSLLQSDYSGLFRDRTYGGLDRIASANQVTTGVTSRIYDDAAVERFNISVGQIYYFTESRTGDDNITWENDDKTGSLVWAGDTYWRISERWGLRGGIQYDTRLDNVATSNSSIEYRRDEDRLVQLNYHYASPEYIQATLPKYYSTAEQYKNGISQVGAVASRPIADRWSIVGAYYYDTNANKQADSMLGVQYSSCCYAIRVGYERKLNGWDNDKQHAVYDNAIGFNIELRGLSSNYGLGTQEMLRSNILPYQNTL |
| LPS-assembly lipoprotein LptE | B | 151 | Shigella Flexneri , Synthetic Construct | CGWHLRDTTQVPSTMKVMILDSGDPNGPLSRAVRNQLRLNGVELLDKETTRKDVPSLRLGKVSIAKDTASVFRNGQTAEYQMIMTVNATVLIPGRDIYPISAKVFRSFFDNPQMALAKDNEQDMIVKEMYDRAAEQLIRKLPSIRAADIRS |
| Compound 16 - Bicyclic Peptide Binder | C | 16 | Shigella Flexneri , Synthetic Construct | ACEWCIFWYDPKLCAX |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2025-02-25 Deposition Author(s): Allyjaun, S. , Chirgadze, D.Y. , Dunbar, E. , Hardwick, S.W. , Hubbard, J. , Newman, H. , Van Den Berg, B.