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9Q0W

Cryo-em structure of hiv-1 bg505ds-sosip.664 env trimer bound to dfph-a.01_10r59p_lc fab

PDB DOI: 10.2210/pdb9q0w/pdb

Classification: VIRAL PROTEIN
Organism(s): Human Immunodeficiency Virus 1 , Macaca

Deposited: 2025-08-13
Deposition Author(s): Kwong, P. , Pletnev, S.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.0 Å

9q0w
Literature

Cryo-em structure of hiv-1 bg505ds-sosip.664 env trimer bound to dfph-a.01_10r59p_lc fab

Kwong, P. , Pletnev, S.

Primary Citation of Related Structures: 9Q0W


Proteins
Molecule Chains Sequence Length Organism Sequence
HIV-1 BG505 DS-SOSIP gp120 A 481 Human Immunodeficiency Virus 1 , Macaca AENLWVTVYYGVPVWKDAETTLFCASDAKAYETEKHNVWATHACVPTDPNPQEIHLENVTEEFNMWKNNMVEQMHTDIISLWDQSLKPCVKLTPLCVTLQCTNVTNNITDDMRGELKNCSFNMTTELRDKKQKVYSLFYRLDVVQINENQGNRSNNSNKEYRLINCNTSACTQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGTGPCPSVSTVQCTHGIKPVVSTQLLLNGSLAEEEVMIRSENITNNAKNILVQFNTPVQINCTRPNNNTRKSIRIGPGQAFYATGDIIGDIRQAHCNVSKATWNETLGKVVKQLRKHFGNNTIIRFANSSGGDLEVTTHSFNCGGEFFYCNTSGLFNSTWISNTSVQGSNSTGSNDSITLPCRIKQIINMWQRIGQCMYAPPIQGVIRCVSNITGLILTRDGGSTNSTTETFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTRCKRRVVGRRRRRR
HIV-1 BG505 DS-SOSIP gp120 C 481 Human Immunodeficiency Virus 1 , Macaca AENLWVTVYYGVPVWKDAETTLFCASDAKAYETEKHNVWATHACVPTDPNPQEIHLENVTEEFNMWKNNMVEQMHTDIISLWDQSLKPCVKLTPLCVTLQCTNVTNNITDDMRGELKNCSFNMTTELRDKKQKVYSLFYRLDVVQINENQGNRSNNSNKEYRLINCNTSACTQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGTGPCPSVSTVQCTHGIKPVVSTQLLLNGSLAEEEVMIRSENITNNAKNILVQFNTPVQINCTRPNNNTRKSIRIGPGQAFYATGDIIGDIRQAHCNVSKATWNETLGKVVKQLRKHFGNNTIIRFANSSGGDLEVTTHSFNCGGEFFYCNTSGLFNSTWISNTSVQGSNSTGSNDSITLPCRIKQIINMWQRIGQCMYAPPIQGVIRCVSNITGLILTRDGGSTNSTTETFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTRCKRRVVGRRRRRR
HIV-1 BG505 DS-SOSIP gp120 E 481 Human Immunodeficiency Virus 1 , Macaca AENLWVTVYYGVPVWKDAETTLFCASDAKAYETEKHNVWATHACVPTDPNPQEIHLENVTEEFNMWKNNMVEQMHTDIISLWDQSLKPCVKLTPLCVTLQCTNVTNNITDDMRGELKNCSFNMTTELRDKKQKVYSLFYRLDVVQINENQGNRSNNSNKEYRLINCNTSACTQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGTGPCPSVSTVQCTHGIKPVVSTQLLLNGSLAEEEVMIRSENITNNAKNILVQFNTPVQINCTRPNNNTRKSIRIGPGQAFYATGDIIGDIRQAHCNVSKATWNETLGKVVKQLRKHFGNNTIIRFANSSGGDLEVTTHSFNCGGEFFYCNTSGLFNSTWISNTSVQGSNSTGSNDSITLPCRIKQIINMWQRIGQCMYAPPIQGVIRCVSNITGLILTRDGGSTNSTTETFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTRCKRRVVGRRRRRR
BG505 DS-SOSIP GP41 B 153 Human Immunodeficiency Virus 1 , Macaca AVGIGAVFLGFLGAAGSTMGAASMTLTVQARNLLSGIVQQQSNLLRAPEAQQHLLKLTVWGIKQLQARVLAVERYLRDQQLLGIWGCSGKLICCTNVPWNSSWSNRNLSEIWDNMTWLQWDKEISNYTQIIYGLLEESQNQQEKNEQDLLALD
BG505 DS-SOSIP GP41 D 153 Human Immunodeficiency Virus 1 , Macaca AVGIGAVFLGFLGAAGSTMGAASMTLTVQARNLLSGIVQQQSNLLRAPEAQQHLLKLTVWGIKQLQARVLAVERYLRDQQLLGIWGCSGKLICCTNVPWNSSWSNRNLSEIWDNMTWLQWDKEISNYTQIIYGLLEESQNQQEKNEQDLLALD
BG505 DS-SOSIP GP41 F 153 Human Immunodeficiency Virus 1 , Macaca AVGIGAVFLGFLGAAGSTMGAASMTLTVQARNLLSGIVQQQSNLLRAPEAQQHLLKLTVWGIKQLQARVLAVERYLRDQQLLGIWGCSGKLICCTNVPWNSSWSNRNLSEIWDNMTWLQWDKEISNYTQIIYGLLEESQNQQEKNEQDLLALD
DFPH-a.01_10R59P_LC Fab heavy chain G 233 Human Immunodeficiency Virus 1 , Macaca QVQLQVSGPGVVKASETLSLTCDVSSASNTRDYFYWSWVRQSPGKGLEWIGGVYSNSDTSNKNPSLESRVTISKDTSKNRFFLRLNSVTAADTAVYYCSSRAKIYFAVGYDSGGRIDVWGPGVLVTVATASTKGPSVFPLAPSSRSTSESTAALGCLVKDYFPEPVTVSWNSGSLTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYVCNVNHKPSNTKVDKRVEIKTCG
DFPH-a.01_10R59P_LC Fab heavy chain I 233 Human Immunodeficiency Virus 1 , Macaca QVQLQVSGPGVVKASETLSLTCDVSSASNTRDYFYWSWVRQSPGKGLEWIGGVYSNSDTSNKNPSLESRVTISKDTSKNRFFLRLNSVTAADTAVYYCSSRAKIYFAVGYDSGGRIDVWGPGVLVTVATASTKGPSVFPLAPSSRSTSESTAALGCLVKDYFPEPVTVSWNSGSLTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYVCNVNHKPSNTKVDKRVEIKTCG
DFPH-a.01_10R59P_LC Fab heavy chain K 233 Human Immunodeficiency Virus 1 , Macaca QVQLQVSGPGVVKASETLSLTCDVSSASNTRDYFYWSWVRQSPGKGLEWIGGVYSNSDTSNKNPSLESRVTISKDTSKNRFFLRLNSVTAADTAVYYCSSRAKIYFAVGYDSGGRIDVWGPGVLVTVATASTKGPSVFPLAPSSRSTSESTAALGCLVKDYFPEPVTVSWNSGSLTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYVCNVNHKPSNTKVDKRVEIKTCG
DFPH-a.01_10R59P_LC Fab light chain H 214 Human Immunodeficiency Virus 1 , Macaca DIQMTQSPSRLSASVGDRVTVTCRASQDIDKDLSWFQQKPGKAPTLLIFTASSLQTGVPSRFSGSGSGTEFTLTISSLQPEDFATYFCQQDYSFPLTFGGGTKVDLKRTVAAPSVFIFPPSEDQVKSGTVSVVCLLNNFYPREASVKWKVDGALKTGNSQESVTEQDSKDNTYSLSSTLTLSSTEYQSHKVYACEVTHQGLSSPVTKSFNRGEC
DFPH-a.01_10R59P_LC Fab light chain J 214 Human Immunodeficiency Virus 1 , Macaca DIQMTQSPSRLSASVGDRVTVTCRASQDIDKDLSWFQQKPGKAPTLLIFTASSLQTGVPSRFSGSGSGTEFTLTISSLQPEDFATYFCQQDYSFPLTFGGGTKVDLKRTVAAPSVFIFPPSEDQVKSGTVSVVCLLNNFYPREASVKWKVDGALKTGNSQESVTEQDSKDNTYSLSSTLTLSSTEYQSHKVYACEVTHQGLSSPVTKSFNRGEC
DFPH-a.01_10R59P_LC Fab light chain L 214 Human Immunodeficiency Virus 1 , Macaca DIQMTQSPSRLSASVGDRVTVTCRASQDIDKDLSWFQQKPGKAPTLLIFTASSLQTGVPSRFSGSGSGTEFTLTISSLQPEDFATYFCQQDYSFPLTFGGGTKVDLKRTVAAPSVFIFPPSEDQVKSGTVSVVCLLNNFYPREASVKWKVDGALKTGNSQESVTEQDSKDNTYSLSSTLTLSSTEYQSHKVYACEVTHQGLSSPVTKSFNRGEC
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2025-08-13
Deposition Author(s): Kwong, P. , Pletnev, S.