PDBi (Protein Data Bank in India)

All in One Protein Databank
Home About Help Resources External Links Contact Us
Advanced Search
FASTA Sequence PDB Format mmCIF Format
FASTA Sequence PDB Format PDB Format(gz) PDBx/mmCIF Format PDBx/mmCIF Format(gz) PDBML/XML Format Validation Full PDF Validation CIF

9PNI

Cryo-em structure of j601-1b2 fab in complex with hiv-1 bg505 ds-sosip env trimer

PDB DOI: 10.2210/pdb9pni/pdb

Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Organism(s): Human Immunodeficiency Virus 1 , Macaca Mulatta

Deposited: 2025-07-21
Deposition Author(s): Kwong, P.D. , Wang, S. , Zhou, T.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.83 Å

9pni
Literature

Cryo-em structure of j601-1b2 fab in complex with hiv-1 bg505 ds-sosip env trimer

Kwong, P.D. , Wang, S. , Zhou, T.

Primary Citation of Related Structures: 9PNI


Proteins
Molecule Chains Sequence Length Organism Sequence
Envelope glycoprotein BG505 DS-SOSIP gp41 A 153 Human Immunodeficiency Virus 1 , Macaca Mulatta AVGIGAVFLGFLGAAGSTMGAASMTLTVQARNLLSGIVQQQSNLLRAIEAQQHLLKLTVWGIKQLQARVLAVERYLRDQQLLGIWGCSGKLICCTNVPWNSSWSNRNLSEIWDNMTWLQWDKEISNYTQIIYGLLEESQNQQEKNEQDLLALD
Envelope glycoprotein BG505 DS-SOSIP gp41 B 153 Human Immunodeficiency Virus 1 , Macaca Mulatta AVGIGAVFLGFLGAAGSTMGAASMTLTVQARNLLSGIVQQQSNLLRAIEAQQHLLKLTVWGIKQLQARVLAVERYLRDQQLLGIWGCSGKLICCTNVPWNSSWSNRNLSEIWDNMTWLQWDKEISNYTQIIYGLLEESQNQQEKNEQDLLALD
Envelope glycoprotein BG505 DS-SOSIP gp41 F 153 Human Immunodeficiency Virus 1 , Macaca Mulatta AVGIGAVFLGFLGAAGSTMGAASMTLTVQARNLLSGIVQQQSNLLRAIEAQQHLLKLTVWGIKQLQARVLAVERYLRDQQLLGIWGCSGKLICCTNVPWNSSWSNRNLSEIWDNMTWLQWDKEISNYTQIIYGLLEESQNQQEKNEQDLLALD
Envelope glycoprotein BG505 DS-SOSIP gp120 C 473 Human Immunodeficiency Virus 1 , Macaca Mulatta AENLWVTVYYGVPVWKDAETTLFCASDAKAYETEKHNVWATHACVPTDPNPQEIHLENVTEEFNMWKNNMVEQMHTDIISLWDQSLKPCVKLTPLCVTLQCTNVTNNITDDMRGELKNCSFNMTTELRDKKQKVYSLFYRLDVVQINENQGNRSNNSNKEYRLINCNTSACTQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGTGPCPSVSTVQCTHGIKPVVSTQLLLNGSLAEEEVMIRSENITNNAKNILVQFNTPVQINCTRPNNNTRKSIRIGPGQAFYATGDIIGDIRQAHCNVSKATWNETLGKVVKQLRKHFGNNTIIRFANSSGGDLEVTTHSFNCGGEFFYCNTSGLFNSTWISNTSVQGSNSTGSNDSITLPCRIKQIINMWQRIGQCMYAPPIQGVIRCVSNITGLILTRDGGSTNSTTETFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTRCKRRV
Envelope glycoprotein BG505 DS-SOSIP gp120 G 473 Human Immunodeficiency Virus 1 , Macaca Mulatta AENLWVTVYYGVPVWKDAETTLFCASDAKAYETEKHNVWATHACVPTDPNPQEIHLENVTEEFNMWKNNMVEQMHTDIISLWDQSLKPCVKLTPLCVTLQCTNVTNNITDDMRGELKNCSFNMTTELRDKKQKVYSLFYRLDVVQINENQGNRSNNSNKEYRLINCNTSACTQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGTGPCPSVSTVQCTHGIKPVVSTQLLLNGSLAEEEVMIRSENITNNAKNILVQFNTPVQINCTRPNNNTRKSIRIGPGQAFYATGDIIGDIRQAHCNVSKATWNETLGKVVKQLRKHFGNNTIIRFANSSGGDLEVTTHSFNCGGEFFYCNTSGLFNSTWISNTSVQGSNSTGSNDSITLPCRIKQIINMWQRIGQCMYAPPIQGVIRCVSNITGLILTRDGGSTNSTTETFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTRCKRRV
Envelope glycoprotein BG505 DS-SOSIP gp120 I 473 Human Immunodeficiency Virus 1 , Macaca Mulatta AENLWVTVYYGVPVWKDAETTLFCASDAKAYETEKHNVWATHACVPTDPNPQEIHLENVTEEFNMWKNNMVEQMHTDIISLWDQSLKPCVKLTPLCVTLQCTNVTNNITDDMRGELKNCSFNMTTELRDKKQKVYSLFYRLDVVQINENQGNRSNNSNKEYRLINCNTSACTQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGTGPCPSVSTVQCTHGIKPVVSTQLLLNGSLAEEEVMIRSENITNNAKNILVQFNTPVQINCTRPNNNTRKSIRIGPGQAFYATGDIIGDIRQAHCNVSKATWNETLGKVVKQLRKHFGNNTIIRFANSSGGDLEVTTHSFNCGGEFFYCNTSGLFNSTWISNTSVQGSNSTGSNDSITLPCRIKQIINMWQRIGQCMYAPPIQGVIRCVSNITGLILTRDGGSTNSTTETFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTRCKRRV
J601-1B2 heavy chain H 234 Human Immunodeficiency Virus 1 , Macaca Mulatta QVQVQESGPGIVKPSETLSLTCAASRGPFSGGHFYWNWFRQPPGKGLEWIGGIYSDGDAADYNPSLESRVAISRDRSANRFSLKLISVTTTDTAVYYCSSTYSWNNVWFDQWGQGVLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDKGLEVLFQ
J601-1B2 heavy chain J 234 Human Immunodeficiency Virus 1 , Macaca Mulatta QVQVQESGPGIVKPSETLSLTCAASRGPFSGGHFYWNWFRQPPGKGLEWIGGIYSDGDAADYNPSLESRVAISRDRSANRFSLKLISVTTTDTAVYYCSSTYSWNNVWFDQWGQGVLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDKGLEVLFQ
J601-1B2 heavy chain D 234 Human Immunodeficiency Virus 1 , Macaca Mulatta QVQVQESGPGIVKPSETLSLTCAASRGPFSGGHFYWNWFRQPPGKGLEWIGGIYSDGDAADYNPSLESRVAISRDRSANRFSLKLISVTTTDTAVYYCSSTYSWNNVWFDQWGQGVLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDKGLEVLFQ
J601-1B2 light chain L 214 Human Immunodeficiency Virus 1 , Macaca Mulatta DIQLTQSPSSLSASVGDRVTITCRASQDINTDLSWYYQKSGEAPKLLIYRASNLQGGAPSRFSGTGSGTEFTLTISSLQPEDFITYYCQQRYSFPITFGAGTKVDIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
J601-1B2 light chain K 214 Human Immunodeficiency Virus 1 , Macaca Mulatta DIQLTQSPSSLSASVGDRVTITCRASQDINTDLSWYYQKSGEAPKLLIYRASNLQGGAPSRFSGTGSGTEFTLTISSLQPEDFITYYCQQRYSFPITFGAGTKVDIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
J601-1B2 light chain E 214 Human Immunodeficiency Virus 1 , Macaca Mulatta DIQLTQSPSSLSASVGDRVTITCRASQDINTDLSWYYQKSGEAPKLLIYRASNLQGGAPSRFSGTGSGTEFTLTISSLQPEDFITYYCQQRYSFPITFGAGTKVDIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2025-07-21
Deposition Author(s): Kwong, P.D. , Wang, S. , Zhou, T.