9PJ8
C. acnes 70s ribosome bound to sarecycline
PDB DOI: 10.2210/pdb9pj8/pdb
Classification: RIBOSOME Organism(s): Cutibacterium Acnes , Escherichia Coli , Synthetic Construct
Deposited: 2025-07-12 Deposition Author(s): Bunick, C.G. , Devarkar, S.C. , Lomakin, I.B.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 2.5 Å
C. acnes 70s ribosome bound to sarecycline
Bunick, C.G. , Devarkar, S.C. , Lomakin, I.B.
Primary Citation of Related Structures: 9PJ8
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| 50S ribosomal protein L33 | 0 | 56 | Cutibacterium Acnes , Escherichia Coli , Synthetic Construct | MAKKSGDVRPKITLACTECKERNYITKKNRRNNPDRMEMAKFCPRCRKHTAHRETR |
| 50S ribosomal protein L4 | E | 301 | Cutibacterium Acnes , Escherichia Coli , Synthetic Construct | MNETKTIDVLDVKGKKAGSAELPGDLFDVNTNIPLIHQVVVAQLAAARQGTHATKTRGQVSGGGKKPWRQKGTGRARQGSTRAPQWVGGGTVHGPQPRSYAQRTPKKMVGAALRGALSDMARDNRIFVVTSLVDGDKPSTKQAKAVLSGLAELRKVLVVLDRSDEIDWLSVRNLSEVHVLAADQLNTYDVVNARTIVFSQAGLDAFVGARSANTQALSAEPEVPETNVADQHPYGEDSFRGDNPPAGFDIKGNEDSMKFHEPSSPWYGRTIAEVWFRSAAAAEAAGFVNAVKSDSEKEDAK |
| 50S ribosomal protein L5 | F | 210 | Cutibacterium Acnes , Escherichia Coli , Synthetic Construct | MSTDAIAHEMPRLKKQYREQIRAAMQEEFGYRNPMLIPGLEKIVVNMGVGDAAHDSKVMDGAIRDITAITGQKPQVTKARKSIAQFKLREGQPIGCHVTLRGDRMWEFADRLLTLALPRIRDFRGLNSNQFDGKGNYTFGLSEQVMFLEIDQDKIDRIRGMDITFVTTAQTNEEGKALLKHLGFPFKAKDDPKKAKTKRGPAYYAKKKKK |
| 50S ribosomal protein L6 | G | 180 | Cutibacterium Acnes , Escherichia Coli , Synthetic Construct | MSRIGRLPIAVPSGVEVKLDGQYVEVKGPKGTLNFTVREPITVSKNDEGAILVERPDDERENRSLHGLTRTLINNMVIGVTEGYEKKLEIQGVGYRVLSKGPKQLEFNLGFSHPVIVDAPEGITFAVENPTKFSVQGIDKQVVGETAANIRKIRKPEPYKGKGVRYEGENVRRKVGKAGK |
| 30S ribosomal protein S8 | H | 135 | Cutibacterium Acnes , Escherichia Coli , Synthetic Construct | MTMTDPIADMLTRLRNANQAYHDQTSMPHSKIKAGIAGILKSEGYIADYKVNEPKEGEVGKTLTLTLKYGENRERSIAGVRRISKPGLRVYAKSTALPKVLGGLGIAIISTSQGLLTDKQAHEKSVGGEVLAYVW |
| 50S ribosomal protein L13 | I | 147 | Cutibacterium Acnes , Escherichia Coli , Synthetic Construct | MTTYSPKAGEVQRKWYVIDAEDIVLGRLATTAANLLRGKHKPQYAPHIDTGDFVVVVNASKIALTGKKATDSLRYDHSGRPGGLRVTSIGEMLAKNPRRAVERAVWGMMPKNKLSRQQLKKLKVYGGPEHPHAAQNPQPYEITQIAQ |
| 50S ribosomal protein L14 | J | 122 | Cutibacterium Acnes , Escherichia Coli , Synthetic Construct | MIQQETRLKVADNTGAKELLCIRVLGGSKRRYAYLGDTIVCTVKDAIPGGNVKKGEVVKAVVVRTVKSHRRPDGSYIKFDENAAVLLKGDGEPRGTRIFGPIARELREKKFMRIVSLAPEVI |
| 50S ribosomal protein L15 | K | 146 | Cutibacterium Acnes , Escherichia Coli , Synthetic Construct | MAIELHDLKPAPGAHKAKTRVGRGEGSKGKTAGRGTKGTGARKNVPEFFAGGQMPIHMQAPKLGGFHNPFRTEYQVVNLDKVEALFPKGGKITVDDLVSVGAVRDNELVKVLGTGELTVKVDLVVDAWSKSAQEKIEKAGGSVTKR |
| 50S ribosomal protein L16 | L | 139 | Cutibacterium Acnes , Escherichia Coli , Synthetic Construct | MLIPRRVKYRKQHHPKRTGAAKGGTQLAFGDYGIQATEGGYLTNRQIEAARIAMTRYIKRGGKVWINVYPDRPMTKHPAESRMGSGKGTPEWWIANIKPGRVLFELSGVPEDVAREAMRLAIHKLPMKARFISREGGDN |
| Large ribosomal subunit protein bL17 | M | 187 | Cutibacterium Acnes , Escherichia Coli , Synthetic Construct | MPKPTKGPRLGGSPAHERIILRNLASQLFEHGRVVTTVTKAKRVRPLAEKLINRAKTDTVANRRFVNRTITDRGIVHILFTEIGPRMEGRDGGYTRVTRIGIRKGDNAPMAVIEVISDKVAPKAPASAADAKAQINTATEAKDAEPEAGDAAVEHNAPAEDAAAQAPVADEQEAAEADEKAEEKPEA |
| 50S ribosomal protein L18 | N | 127 | Cutibacterium Acnes , Escherichia Coli , Synthetic Construct | MASTLTVRKSLSDRAKARARRQARGRKKIFGTVERPRMVVTRSSKHVFVQVIDDVAGNTLVSASTMEAELREMSGDKTAKAARVGTIIGERAKAAGITKVVFDKAGNQYHGRIAALADAAREAGLDF |
| 50S ribosomal protein L34 | 1 | 44 | Cutibacterium Acnes , Escherichia Coli , Synthetic Construct | MKRTFQPSNRRRARNHGFRSRMSTRAGRSILAARRRKGRVNLSA |
| 50S ribosomal protein L19 | O | 117 | Cutibacterium Acnes , Escherichia Coli , Synthetic Construct | MSNIIDEIDKASMRDDIPEFRPGDSVKVHVKVVEGSRTRVQVFSGIVISRTGGGVQESFTVRKLSFGTGVERTFPLHSPIIDKIEVDRHGAVRRAKLYYLRGRRGKAAKIKERGSAR |
| 50S ribosomal protein L20 | P | 123 | Cutibacterium Acnes , Escherichia Coli , Synthetic Construct | MARVKRSVNAKKKRREVLDQASGYRGQRSRLYRKAKEQTLHSATYSFRDRRAKKGDFRSLWIQRINAASRAQGMTYNRFINGLKNAGVEVDRKMLAELAVSDINAFNSLVEVAKASQPQNAAA |
| Large ribosomal subunit protein bL21 | Q | 102 | Cutibacterium Acnes , Escherichia Coli , Synthetic Construct | MYAIVRSGGRQHKVAVGDVVEIDKVADEAGSSIELTPLLVVDGESVTSDKDALGKVKVTAEVLGETKGPKIRILKYKNKTGYKKRQGHRQKYTQVKVTGIEG |
| 50S ribosomal protein L22 | R | 153 | Cutibacterium Acnes , Escherichia Coli , Synthetic Construct | MSKTERPSRRAALLGDRPGSYAIARHVRMSASKCRRVINLVRGMDAVDAVTMLKFQPQAAAEPIRKVIASAMANAEQTEGLRADDLYISQAFVDEGITMRRIRPRAKGSASRILKRSAHITVVVEPKEARQARKKAKSGRPAAAAKSETEKGA |
| 50S ribosomal protein L23 | S | 102 | Cutibacterium Acnes , Escherichia Coli , Synthetic Construct | MSELKIRDPRDIILAPVVSEKSYGLLDQNTYTFVVKPTANKTEIKIAIEQIFGVKVTSVNTMNRKGKVRRTRTGVGKRPDTKRAIVTVAEGDRIDIFTGPVA |
| Large ribosomal subunit protein uL24 | T | 122 | Cutibacterium Acnes , Escherichia Coli , Synthetic Construct | MKSLKIKKGDRVKVIAGNDKGAIGEVLSVDPARERVVVEGVNIRKHHRRDMPTPQGGTTKGGIISSEAPIHVSNVQLVTKIDGKDVVTRVGYRRVDVTKRRPDGSEYAAQRSVRYLKKEEAK |
| 50S ribosomal protein L25 | U | 205 | Cutibacterium Acnes , Escherichia Coli , Synthetic Construct | MADIIHLKAEQRTEFGKGAARRIRRDDKVPAVMYGHDHDPIHVTLDGHATLLALRTENPLLSIEIEGQKPMLALPKDVQRDVLKGFVRHVDLLTVRRGEKVDVNVALRITGESAPGTIAMTEFNEIEVQADLLNIPEVIEIDVTGLEAGTTIYLGDLKLPEGTSLLGDAEDVAATVAFPETEPVEDEESAGEDAQGESEEKAAKE |
| 50S ribosomal protein L27 | V | 89 | Cutibacterium Acnes , Escherichia Coli , Synthetic Construct | MAHKKGASSSRNGRDSNAQRLGVKRFGGQLVNAGEIIVRQRGTHFHPGDGVGRGGDDTLFALRDGNVEFGTRRGRRVVNVTPVEAPVEA |
| 50S ribosomal protein L29 | X | 77 | Cutibacterium Acnes , Escherichia Coli , Synthetic Construct | MPKLSAAELRQLSGEELRNKVRELKEELFGLRFQSATGQLENTARLREVRKDIARVYTVLQERNLNIVDDPDSTKEA |
| 50S ribosomal protein L30 | Y | 60 | Cutibacterium Acnes , Escherichia Coli , Synthetic Construct | MSKLKITQIKSGIATKPNHRETLRSLGLKRIGDTVIKEDRPEFRGMVRTVRHLVTMEEVD |
| Large ribosomal subunit protein bL35 | 2 | 68 | Cutibacterium Acnes , Escherichia Coli , Synthetic Construct | MPKMKSHSGTKKRFKVTGSGKVTARKAGKRHLNEHKSSRVTRRLTGETVLSKGEAAKVKKLLAGHPGR |
| 30S ribosomal protein S2 | B | 283 | Cutibacterium Acnes , Escherichia Coli , Synthetic Construct | MAVVTTRQLLESGVHFGHQTRRWNPKMKRFIFTERNGIYIIDLHQSLTYIDKAYAFVKETVAKGGQILFVGTKKQAQESIVEQATRVGMPYVNQRWLGGMLTNFQTISKRIARLKELEAMDFDKVSGSGLTKKELLMLSREKDKLEKDLGGIRDMPKVPQAVWVVDTKKEHLAIDEARKLKIPVVAILDTNCDPDEVDYAIPGNDDAIRSVSLLTRIIADAAAEGLMARSAGKSGEQPAEAEPMPDWERELLEGDGAKTEAKAEEPKAEAKKADEAPEAEKSN |
| 30S ribosomal protein S4 | D | 201 | Cutibacterium Acnes , Escherichia Coli , Synthetic Construct | MARYTGPLTKKSRRLGTDLVGNDKSFERRPYPPGVHGRGRTKDSEYSLQLREKQKARYAYGVLEKQFRRYYEEADRAQGKTGDVLLQILESRLDNVVYRAGLAATRRQARQMVSHGHFLVNGKKVNIPSYRVSTHDIIDVREKSKDLPPIVIARETFETRDVPAWLEVRPNKGRILVHQLPTRDQIVIDVNEQAIVELYSK |
| 50S ribosomal protein L36 | 3 | 37 | Cutibacterium Acnes , Escherichia Coli , Synthetic Construct | MKVQPSVKKICDKCKVIRRHGRVMVICDNPRHKQRQG |
| 50S ribosomal protein L31 | 4 | 69 | Cutibacterium Acnes , Escherichia Coli , Synthetic Construct | MKQGIHPDYRETTVVCTCGNTFTTRSTSQSGTLNADVCSKCHPFYTGKQKILDAGGRVARFERRYGKKN |
| 50S ribosomal protein L28 | W | 61 | Cutibacterium Acnes , Escherichia Coli , Synthetic Construct | MAAVCDICAKRPGFGHNVPWSKKKTNRRWSPNIQRVRVVENGTHKRMNVCTSCLKAGRVSR |
| 50S ribosomal protein L32 | Z | 63 | Cutibacterium Acnes , Escherichia Coli , Synthetic Construct | MAVPKRKMSRSNTRHRRSQWKTVATKLVTCANPACGEKHLPHTACPSCGGYGPRGDRRQVVEA |
| Nucleic Acids / Hybrid | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| 16S rRNA | a | 1537 | NA | UUUUUCAUUGGAGAGUUUGAUCCUGGCUCAGGACGAACGCUGGCGGCGUGCUUAACACAUGCAAGUCGAACGGAAAGGCCCUGCUUUUGUGGGGUGCUCGAGUGGCGAACGGGUGAGUAACACGUGAGUAACCUGCCCUUGACUUUGGGAUAACUUCAGGAAACUGGGGCUAAUACCGGAUAGGAGCUCCUGCUGCAUGGUGGGGGUUGGAAAGUUUCGGCGGUUGGGGAUGGACUCGCGGCUUAUCAGCUUGUUGGUGGGGUAGUGGCUUACCAAGGCUUUGACGGGUAGCCGGCCUGAGAGGGUGACCGGCCACAUUGGGACUGAGAUACGGCCCAGACUCCUACGGGAGGCAGCAGUGGGGAAUAUUGCACAAUGGGCGGAAGCCUGAUGCAGCAACGCCGCGUGCGGGAUGACGGCCUUCGGGUUGUAAACCGCUUUCGCCUGUGACGAAGCGUGAGUGACGGUAAUGGGUAAAGAAGCACCGGCUAACUACGUGCCAGCAGCCGCGGUGAUACGUAGGGUGCGAGCGUUGUCCGGAUUUAUUGGGCGUAAAGGGCUCGUAGGUGGUUGAUCGCGUCGGAAGUGUAAUCUUGGGGCUUAACCCUGAGCGUGCUUUCGAUACGGGUUGACUUGAGGAAGGUAGGGGAGAAUGGAAUUCCUGGUGGAGCGGUGGAAUGCGCAGAUAUCAGGAGGAACACCAGUGGCGAAGGCGGUUCUCUGGGCCUUUCCUGACGCUGAGGAGCGAAAGCGUGGGGAGCGAACAGGCUUAGAUACCCUGGUAGUCCACGCUGUAAACGGUGGGUACUAGGUGUGGGGUCCAUUCCACGGGUUCCGUGCCGUAGCUAACGCUUUAAGUACCCCGCCUGGGGAGUACGGCCGCAAGGCUAAAACUCAAAGGAAUUGACGGGGCCCCGCACAAGCGGCGGAGCAUGCGGAUUAAUUCGAUGCAACGCGUAGAACCUUACCUGGGUUUGACAUGGAUCGGGAGUGCUCAGAGAUGGGUGUGCCUCUUUUGGGGUCGGUUCACAGGUGGUGCAUGGCUGUCGUCAGCUCGUGUCGUGAGAUGUUGGGUUAAGUCCCGCAACGAGCGCAACCCUUGUUCACUGUUGCCAGCACGUUAUGGUGGGGACUCAGUGGAGACCGCCGGGGUCAACUCGGAGGAAGGUGGGGAUGACGUCAAGUCAUCAUGCCCCUUAUGUCCAGGGCUUCACGCAUGCUACAAUGGCUGGUACAGAGAGUGGCGAGCCUGUGAGGGUGAGCGAAUCUCGGAAAGCCGGUCUCAGUUCGGAUUGGGGUCUGCAACUCGACCUCAUGAAGUCGGAGUCGCUAGUAAUCGCAGAUCAGCAACGCUGCGGUGAAUACGUUCCCGGGGCUUGUACACACCGCCCGUCAAGUCAUGAAAGUUGGUAACACCCGAAGCCGGUGGCCUAACCGUUGUGGGGGAGCCGUCGAAGGUGGGACUGGUGAUUAGGACUAAGUCGUAACAAGGUAGCCGUACCGGAAGGUGCGGCUGGAUCACCUCCUUUCUAAGGAG |
| initiator tRNA Met (76-MER) | c | 77 | NA | CGCGGGGUGGAGCAGCCUGGUAGCUCGUCGGGCUCAUAACCCGAAGGUCGUCGGUUCAAAUCCGGCCCCCGCAACCA |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2025-07-12 Deposition Author(s): Bunick, C.G. , Devarkar, S.C. , Lomakin, I.B.