9OWZ
Structure of a. thaliana tbp bound to ag-p nicked dna site
PDB DOI: 10.2210/pdb9owz/pdb
Classification: DNA BINDING PROTEIN Organism(s): Arabidopsis Thaliana , Synthetic Construct
Deposited: 2025-06-02 Deposition Author(s): Schumacher, M.A.
Experimental Data Snapshot
Method: X-RAY DIFFRACTION Resolution: 2.91 Å
Structure of a. thaliana tbp bound to ag-p nicked dna site
Primary Citation of Related Structures: 9OWZ
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| TATA-box-binding protein 1 | B | 203 | Arabidopsis Thaliana , Synthetic Construct | GSHMTDQGLEGSNPVDLSKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAKSEDFSKMAARKYARIVQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHAAFSSYEPELFPGLIYRMKVPKIVLLIFVSGKIVITGAKMRDETYKAFENIYPVLSEFRKIQQ |
| TATA-box-binding protein 1 | A | 203 | Arabidopsis Thaliana , Synthetic Construct | GSHMTDQGLEGSNPVDLSKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAKSEDFSKMAARKYARIVQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHAAFSSYEPELFPGLIYRMKVPKIVLLIFVSGKIVITGAKMRDETYKAFENIYPVLSEFRKIQQ |
| TATA-box-binding protein 1 | G | 203 | Arabidopsis Thaliana , Synthetic Construct | GSHMTDQGLEGSNPVDLSKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAKSEDFSKMAARKYARIVQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHAAFSSYEPELFPGLIYRMKVPKIVLLIFVSGKIVITGAKMRDETYKAFENIYPVLSEFRKIQQ |
| TATA-box-binding protein 1 | J | 203 | Arabidopsis Thaliana , Synthetic Construct | GSHMTDQGLEGSNPVDLSKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAKSEDFSKMAARKYARIVQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHAAFSSYEPELFPGLIYRMKVPKIVLLIFVSGKIVITGAKMRDETYKAFENIYPVLSEFRKIQQ |
| TATA-box-binding protein 1 | M | 203 | Arabidopsis Thaliana , Synthetic Construct | GSHMTDQGLEGSNPVDLSKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAKSEDFSKMAARKYARIVQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHAAFSSYEPELFPGLIYRMKVPKIVLLIFVSGKIVITGAKMRDETYKAFENIYPVLSEFRKIQQ |
| TATA-box-binding protein 1 | P | 203 | Arabidopsis Thaliana , Synthetic Construct | GSHMTDQGLEGSNPVDLSKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAKSEDFSKMAARKYARIVQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHAAFSSYEPELFPGLIYRMKVPKIVLLIFVSGKIVITGAKMRDETYKAFENIYPVLSEFRKIQQ |
| Nucleic Acids / Hybrid | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| DNA (5'-D(*GP*CP*TP*AP*TP*AP*AP*AP*AP*GP*CP*GP*C)-3') | c | 13 | NA | GCTATAAAAGCGC |
| DNA (5'-D(*GP*CP*TP*AP*TP*AP*AP*AP*AP*GP*CP*GP*C)-3') | e | 13 | NA | GCTATAAAAGCGC |
| DNA (5'-D(*GP*CP*TP*AP*TP*AP*AP*AP*AP*GP*CP*GP*C)-3') | h | 13 | NA | GCTATAAAAGCGC |
| DNA (5'-D(*GP*CP*TP*AP*TP*AP*AP*AP*AP*GP*CP*GP*C)-3') | k | 13 | NA | GCTATAAAAGCGC |
| DNA (5'-D(*GP*CP*TP*AP*TP*AP*AP*AP*AP*GP*CP*GP*C)-3') | n | 13 | NA | GCTATAAAAGCGC |
| DNA (5'-D(*GP*CP*TP*AP*TP*AP*AP*AP*AP*GP*CP*GP*C)-3') | q | 13 | NA | GCTATAAAAGCGC |
| DNA (5'-D(P*TP*TP*TP*TP*AP*TP*AP*GP*C)-3') | d | 9 | NA | TTTTATAGC |
| DNA (5'-D(P*TP*TP*TP*TP*AP*TP*AP*GP*C)-3') | f | 9 | NA | TTTTATAGC |
| DNA (5'-D(P*TP*TP*TP*TP*AP*TP*AP*GP*C)-3') | i | 9 | NA | TTTTATAGC |
| DNA (5'-D(P*TP*TP*TP*TP*AP*TP*AP*GP*C)-3') | l | 9 | NA | TTTTATAGC |
| DNA (5'-D(P*TP*TP*TP*TP*AP*TP*AP*GP*C)-3') | o | 9 | NA | TTTTATAGC |
| DNA (5'-D(P*TP*TP*TP*TP*AP*TP*AP*GP*C)-3') | r | 9 | NA | TTTTATAGC |
Experimental Data
Method: X-RAY DIFFRACTION
Deposited Date: 2025-06-02 Deposition Author(s): Schumacher, M.A.