PDBi (Protein Data Bank in India)

All in One Protein Databank
Home About Help Resources External Links Contact Us
Advanced Search
FASTA Sequence PDB Format mmCIF Format
FASTA Sequence PDB Format PDB Format(gz) PDBx/mmCIF Format PDBx/mmCIF Format(gz) PDBML/XML Format Validation Full PDF Validation CIF

9OKD

Structure of the monomeric bombyx mori ccan bound to linear dna

PDB DOI: 10.2210/pdb9okd/pdb

Classification: DNA BINDING PROTEIN/DNA
Organism(s): Bombyx Mori , Synthetic Construct

Deposited: 2025-05-09
Deposition Author(s): Ciferri, C. , Yatskevich, S.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.83 Å

9okd
Literature

Structure of the monomeric bombyx mori ccan bound to linear dna

Ciferri, C. , Yatskevich, S.

Primary Citation of Related Structures: 9OKD


Proteins
Molecule Chains Sequence Length Organism Sequence
bmCENP-H H 239 Bombyx Mori , Synthetic Construct MSAFKTLKEVSQNFEQELKQLSNVLFSAKIGETFEDAVSKKLQELSLFSSKLKLLRAKPVSLTPQITEQVKTEEIIKEYGDVAAIKLLEKVTVKCVAQTHAVKKLITTPDRALDAEMLTRKQNIMEALTNYRDKETSLRHFEMILQEKQYEHNLLRAEWDKSLGELRDMKAAVSDDEEMDTNSAYYVRLRTLVSKMEMIRWLIGRLVVCRKESRNDPRRALQALKMARQVLDVDTFMSD
CS-1 A 95 Bombyx Mori , Synthetic Construct MAQLQQLQQDLQNELITTNQLLHLIGNELQQIICLTSSGGEIEKNIKKNASLMSILANLQHIDIENIPLVTRNQVTSNQNTEELNLQRNVLDETD
DASH complex subunit DAD4 C 72 Bombyx Mori , Synthetic Construct MSNNSETSLSQRDKAAELPMELESIRALNACLQAYLEHIRNVKRNLLAMNDNYRDLEDVNRQWQEVVEFRRE
CS-4 D 81 Bombyx Mori , Synthetic Construct MNSTVSDDLTRENSASEISKCISRLSANNRNLSLLHKELLEINLSVKAYVQESKKRLQGLRLDLAHEARSSHQVVELLTEK
CS-2 B 82 Bombyx Mori , Synthetic Construct MTSVAPSDSESNVSGFVRYSDKSFKHLYTSVLEKLELINQDILQIENNLKNLIQHAGPLESQLSAVLHSLPKPNTNTAMETE
bmCENP-K K 219 Bombyx Mori , Synthetic Construct MTSKHNAETLDALKREIKTLQNNCLNVCNIIENAPPETPSANQDEISDKCLSYIQALKTEIENPNTIITTDENLLTSQFLNEIKEKTGQIEELTAFTKGSIRDVDEEIMRLKNQITIAQEAMSKPIQKYGQVSSEHVKNAKEKFSQLKSELHGLIYSMFPNTSALIIEFMGQLMAERLNPASSGYIQITAENYQIAELLKDTNIISTNPYNKMEVKLAY
Centromere protein I I 661 Bombyx Mori , Synthetic Construct MCDIGEIIDYIKSLKRGFDKDLFQSKIDELGYIVDSVGLDYDDFHTLFKIWLNLSIPLTKWTSLGACLIPPDAVEEKTVDYAIQWILINYGNQNSFTKTGFLLDWLTAAMECDCIDMKALDFGYELFYSMMTYETLTPQAVKLVYTLTKPSDVTRRRVIEILDCAKKRESKKNLFRQLQILLGLFKSYKPECVPENVPAICVHTAFKKINKDLLGRFKRTQERRNRQSKEKQHLIWLNPINMARGRNKKIVPLVPNMEFFNIGSKQYDQKEPQKNYLDFSDPASVVQLAACGRAARPARLRALLCGPALLLAAAAADQHAFLSHDLRHLLDNCFLDISPYSYAEKQDLLQRLALLQSTLLQGIPVITRFLAQFLPLWNERDYFTEILQLVEWVSVDSPDHLGYIVGPLIKIYHRAQPLEQCAILKSLTQMYINLVYASTRRRQFFMAIDTPKENYDVVLPRLAAELGEMGEKALQYNPDDMRVLFSNIWSVECRSRAHLLYNIGLGPIPGLLSLSLPLLGVSAALIEKMAALLVIYKKIFTRLKSTNAISATHTEQIQILHRYSVDLSSLYTEESLRGRGNGFVFDKLHPQLVSKLYHLIPEPDTKLSVRSHVAFAAYTYVALGDVDERDADNKAWYRAFLEHEFSYLAKFFKKTVPELRM
Centromere protein M M 180 Bombyx Mori , Synthetic Construct MSLLEEDAVIAPWVGPMSAKNSLTAIVLSLNVEVIEKVSEALSEVHKKSRFRWKLVVLRSFHLEEVVKQSDLTGRVAIDFVIIALDTSRLFCLEWAKKELSQVHPDLRRRRVVLVNTSGLPVNAMAITAGELINFYTENNVDLLTADISNTENTTLLAQKLLKYMEVSIGVRTGIPNINV
Centromere protein L L 302 Bombyx Mori , Synthetic Construct MSSLRLDSCWEQEEDGNTSRHVTGDPIALIYNEGLWKINKVSPLYNLQYNGIKLKQYGSKILQALVSSLQMSNTAKYTVVLEELPLLKYSEEDSSGILITVRSSQEDSNTKKVAYVAILLSWGISISMENAIHLPYMLERGEQRVGTVVKTILQTAFDCNIKQFSFTQHQLLNFGFSFIDSDTSRSNDQFTLVYRSPQTEVKSKLSLSFDIGDVRLIWNGIKDETTKKADLIILAYQILQNQIFSLGYLDVTVFDLSEINLTKAEIKCNGGVKMKTPEIVNCVFTVLNEICCDLWQDLNITE
bmCENP-N N 328 Bombyx Mori , Synthetic Construct MKNSNKLKDLQMTIARMPLQQCCVTVLPEFGVKWREVFRAVRLARLPMTAASVARVLTRHIAKSLEAHELNDILARLKLKLVASQNRMWHVVNMSEQHTAGPITELIETLPEVIENNLKKGKHRFTRPEVQTNLIGDLLYISVQLVSDTKEGSTLYVATPPGESVALFSTLSMSAQIKACVDALGYRKYEDAKLHGKDIPSLLRINDRAWSGMAQNLASVPDYAPKPILTYNGIDYTNRTYDAEYIENILGPDPPLLTDLTIKTSKPFFDASMLSKNINMKITLKSENVAETLKSWVVKGALAPTSEFFHIFHNIKSNNISRNIDDTD
Centromere protein O O 325 Bombyx Mori , Synthetic Construct MKQTKITKLFQTKLVARRSSDDCDELQDEIEKLRENLKEKQNELFQLQRNSYKHKSSPVKKKSEQFVRPQKIVLTNSIDSLKRNLELMSILTGMEVQSYVVGEHCCVVYHMQHDSDNVVKHGLRIEMQAGANVVSKSSLPLGFNINAVMEEYDNIMMPECLGAIRKALVAYYDRLQQFEALKKMLNVEAQLFKLLDASHIEISFSAQSAVEEDEHLNLVLVLDYRVYDIRPKQYSFKDLDIPAGAVAALKEQCTVFKRKPLQRAFRDAFIDGVGPYQMIHQIGFKPVERKSHRRKRFKAHPYNHNNDDTFRPEDCSDQSEEGPEP
bmCENP-P P 638 Bombyx Mori , Synthetic Construct MPINKIHYDKKTLLLEKQSLLDNIVYCETRIAELLTKKCTNYIEDSDSSGSEDGFTLSIDPGPTVSQLKLLQSSLQTCLQATQELTNLQVLQSEVNVMVTEPELEGEPPVTESGAWREVTADCRIDLVPFSVQFYMHQPDRKFSAPSYRKLCVILVKAAHETELAKSVLPHLTRPSDVVEVLKSYSVAYRSRRTSLARLAEKYESSLYMEPAAEGGYLLRCANLLEVHWRLENKVSAVAPFYHRMKFDLEYMNESYVAKISEAHKQLSDPALSTDERTLLLSKIITVCLEVNGQETVEPSRLDTRQDALDGDPAPNIMAPPKEIPRKLAKKPSKSLKRSQPDTANVSAKKGKSAPDDTTENQSDNINIHNLVDNIDSKKNNFEATTKNVVTSQSTNKDKSSGNTELEKAQMIKKPIAENGGRGNKQSSNSEVNVKSVKSSAASKKIPTHKSRLAEKSSVASAEIKSTSKNVAAIKSRTEKLNLNENDKNVMNTNNKNNGNELIEKVTERNKHITPNKRENVANINVDNSRDKQKNDLQNKKIQKKILIKSHKNPSSKIKAGNNNVLSAGNTDAAKKSKIPQKVSSPVVDSIIKKNMLRISPRRLPANIKSSSETSNKQRLIKTSTSIPRLLKPTSKIK
bmCENP-T T 1016 Bombyx Mori , Synthetic Construct MPSSKIPSPARSQGSLLTPRRHRTRSTRSVGSPARSNTPSRLTAIIMQNKEPSFVLSPLPTRRSVLNDDTEVEEPQRKSWWRKLDENSRDILEVLEGNKVGETYEAVEEILNVEILSQEKKNYTSDLPDSSDSESINSIVMPQRKLFIQKENVPKKKFGQLIDNRESLANVDKTTAHEKSVTVTTKSLFQNNKRKRVFPAAALNLSPNKTAVDKTKQCIVDPPQNQPRNIFGYRPAAKRKNMFAEFIVSESEDEISEIQPKVFEYQKQFEHRRSRASNSRPIRETSPASSITTDMELDDWKYLPSSTIVESHDQNLTENHANTIVLKEHDPKKQVSTQHAQQPNDEDHEMVCENNVDQKMFQDKETDNRQQGITPYNNDRGNNTSNKDQTQKEAVEVEHSHNEFQENQQNITNKQKNAENISNVDNSGEQADIFTPQNEEIVEQENENNDFRKPENIGSQNNIDIEKHADNEKNNHVEEVDQNAETEEKIHHSNNTDISSEQNAEVIASNEEEQMNSHGNETGIEESDQNAESEASCAEEEQEETVNEECESEENNSERALEDSTVENNDETEIHERSGDQIRESDEDLEIDENMERSELGNESNASNDDEHLYLSDDNDDEPENSAGADINVNDNSPNTDNLDNNEITDRSETVEKVNLPEAILHDKKNESDLFTMQGNNTDLRKTKSIMLMSIRPSLLPPVESTSMTDGTRNSSAEGSGWDSHRTTRKTLRQTFGKDFTPRKSLRALVMEKSAKRQTALVDAKEISKMPQANSTEIPEFNDDYHEAEESIEPTNHEISKNTRQATLEIYLQKIKKSNMEKNMRIEQEVRNSLKAMKQCKQNVNIFKVPAKPLFARHSTKPVQNKNKVREMKSSMPLGDLPPELLEDMKYKPPKRYQPKNASWTTKRLYKYLEDKLEPKYDYKARVRAEKLVETIYHFTKEVKKHEVAPNDAVDVLKHEMARLDIVKTHFDFYQFFHDFMPREIRVKVVPDIVNKITIPRNGVFSEILSGHAVHA

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
DNA (36-MER) g 36 NA CCGGTGCCGAGGCCGCTCAATTGGTCGTAGACAGCT
DNA (36-MER) j 36 NA AGCTGTCTACGACCAATTGAGCGGCCTCGGCACCGG
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2025-05-09
Deposition Author(s): Ciferri, C. , Yatskevich, S.