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FASTA Sequence PDB Format mmCIF Format
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9O0G

Cryoem structure of m. mazei topoisomerase vi(a-e342q)-minicircle dna complex in cleavage state

PDB DOI: 10.2210/pdb9o0g/pdb

Classification: ISOMERASE/DNA
Organism(s): Methanosarcina Mazei Go1 , Unidentified

Deposited: 2025-04-02
Deposition Author(s): Berger, J.M. , Richman, D.E.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.5 Å

9o0g
Literature

Cryoem structure of m. mazei topoisomerase vi(a-e342q)-minicircle dna complex in cleavage state

Berger, J.M. , Richman, D.E.

Primary Citation of Related Structures: 9O0G


Proteins
Molecule Chains Sequence Length Organism Sequence
Type 2 DNA topoisomerase 6 subunit A A 369 Methanosarcina Mazei Go1 , Unidentified MEGEKGSKTRKGDALAREKLLEIAEKIYNQFEEEVVPSVSLPSRTKANLEYSDESDVWVYGDRESERSAKTVKGAFQLLKTTYATDFLINEHLARNRGSTLRELYYISEGWDYAKFKEQGESDRLIEDLEILTSLQREYFHMRPEEDGATMFGPIEITEQTKRGERNIHCQKDVGEGGYQIPFNVENIEFQKHDASMIIAIETGGMYARLMENGFDEAYNAILVHLKGQPARSTRRIIKRMNEELGIPVAVFTDGDPWSYRIYASVAYGAIKSAHLSEFMATPAAKFLGLQPSDIVEYELSTDKLTEQDVSALRSELSDPRFESDYWKEQIQLQLDIGKKAQQQAFAGKGLDFVTEVYLPNRLKEMGMI
Type 2 DNA topoisomerase 6 subunit A C 369 Methanosarcina Mazei Go1 , Unidentified MEGEKGSKTRKGDALAREKLLEIAEKIYNQFEEEVVPSVSLPSRTKANLEYSDESDVWVYGDRESERSAKTVKGAFQLLKTTYATDFLINEHLARNRGSTLRELYYISEGWDYAKFKEQGESDRLIEDLEILTSLQREYFHMRPEEDGATMFGPIEITEQTKRGERNIHCQKDVGEGGYQIPFNVENIEFQKHDASMIIAIETGGMYARLMENGFDEAYNAILVHLKGQPARSTRRIIKRMNEELGIPVAVFTDGDPWSYRIYASVAYGAIKSAHLSEFMATPAAKFLGLQPSDIVEYELSTDKLTEQDVSALRSELSDPRFESDYWKEQIQLQLDIGKKAQQQAFAGKGLDFVTEVYLPNRLKEMGMI
Type 2 DNA topoisomerase 6 subunit B B 621 Methanosarcina Mazei Go1 , Unidentified METPIAEELAKKQKSISVAEFFEKNRQILGFDSAPRSLITTVKEAVDNALDACEEAGILPDILVQVERTGPDYVTVIIEDNGPGIVREQIPKVFAKLLYGSRFHALKQSRGQQGIGISAAVLYAQMTAGRHTKILSKTSPTAPAHYYELMINTSTNEPDILVDEVRDWFRPHGTQIELEMRAAYVKGRRQSIYEYLKATAIVNPHARITLIDPDGNEEVFERATDKMPEPAEEILPHPEGIELGTLMKMLHYTERQKLAPFLRYSFCKIGLLTAEEICKAAGLDPEIDPHALGRHEARKLIEAFEKVKIMAPPTDCLSPIGEDLIYRGLEKETTVDFIATSTRKPAVYSGNPFVVEVGMAYGGNLPKEEKISIMRFANRVPLLYQQGGCVTTHAVEDIKWKQYGLNQPGGGIPVGPVILLIHVASINVPFTSESKDAIADIPVIKEEIDLAIKEVARKLKHYLSKQSNLKKRREKEIIITKVLPKLAAKVAHVLEKDVPDINPVVAKIMGNLLVHRVIKNNGDGTVDVAIKVKNFGTSAYSFRVHEMLPCKVSGAKPEPKVVTMGNDYDYVWDISASAGSSKVLSYKIESASEEELQKLPQLIVEGIEEELVTGAKAFKGV
Type 2 DNA topoisomerase 6 subunit B D 621 Methanosarcina Mazei Go1 , Unidentified METPIAEELAKKQKSISVAEFFEKNRQILGFDSAPRSLITTVKEAVDNALDACEEAGILPDILVQVERTGPDYVTVIIEDNGPGIVREQIPKVFAKLLYGSRFHALKQSRGQQGIGISAAVLYAQMTAGRHTKILSKTSPTAPAHYYELMINTSTNEPDILVDEVRDWFRPHGTQIELEMRAAYVKGRRQSIYEYLKATAIVNPHARITLIDPDGNEEVFERATDKMPEPAEEILPHPEGIELGTLMKMLHYTERQKLAPFLRYSFCKIGLLTAEEICKAAGLDPEIDPHALGRHEARKLIEAFEKVKIMAPPTDCLSPIGEDLIYRGLEKETTVDFIATSTRKPAVYSGNPFVVEVGMAYGGNLPKEEKISIMRFANRVPLLYQQGGCVTTHAVEDIKWKQYGLNQPGGGIPVGPVILLIHVASINVPFTSESKDAIADIPVIKEEIDLAIKEVARKLKHYLSKQSNLKKRREKEIIITKVLPKLAAKVAHVLEKDVPDINPVVAKIMGNLLVHRVIKNNGDGTVDVAIKVKNFGTSAYSFRVHEMLPCKVSGAKPEPKVVTMGNDYDYVWDISASAGSSKVLSYKIESASEEELQKLPQLIVEGIEEELVTGAKAFKGV

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
Minicircle DNA sequence f 35 NA AGGTTACCCCAGTTGGGGCGGGCCCCTTGTACAGC
Minicircle DNA sequence g 39 NA TCGTCCATGCCGAGAGTGATCCCGGCGGCGGTCACGAAC
Minicircle DNA sequence h 37 NA GTTCGTGACCGCCGCCGGGATCACTCTCGGCATGGAC
Minicircle DNA sequence i 37 NA GAGCTGTACAAGGGGCCCGCCCCAACTGGGGTAACCT
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2025-04-02
Deposition Author(s): Berger, J.M. , Richman, D.E.