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9O03

Crystal structure of afogg1:8og-dna duplex in a product-bound state

PDB DOI: 10.2210/pdb9o03/pdb

Classification: HYDROLASE, LYASE/DNA
Organism(s): Archaeoglobus Fulgidus , Synthetic Construct

Deposited: 2025-04-01
Deposition Author(s): Arvai, A.S. , Hitomi, K. , Huffman, J.L. , Mol, C.D. , Syed, A. , Tainer, J.A.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2 Å

9o03
Literature

Crystal structure of afogg1:8og-dna duplex in a product-bound state

Arvai, A.S. , Hitomi, K. , Huffman, J.L. , Mol, C.D. , Syed, A. , Tainer, J.A.

Primary Citation of Related Structures: 9O03


Proteins
Molecule Chains Sequence Length Organism Sequence
8-oxoguanine DNA glycosylase/AP lyase A 203 Archaeoglobus Fulgidus , Synthetic Construct ISEFGSIEKAISRRIKEFRQLGEKGEVEFDFRPFLDFSVKATIRTELAFCISTANSSATAGLKFQRLLGQGVGVKEALTLAGVRFHNRKAEYIREAFKSFKLVEKALEAESSKAREILLKIKGLGMKEASHFLRNVGREDVAIIDRHILRWLERQGYEVPGTMTAKKYLEVEKILMEISEERGESLAEMDLRIWAEMTGKVLK

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
DNA (5'-D(P*GP*AP*GP*TP*CP(PUA))-3') d 6 NA GAGTCX
DNA (5'-D(P*AP*CP*CP*TP*GP*CP*A)-3') b 7 NA ACCTGCA
DNA (5'-D(*TP*GP*CP*AP*GP*GP*TP*CP*GP*AP*CP*TP*CP*TP*A)-3') c 15 NA TGCAGGTCGACTCTA
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2025-04-01
Deposition Author(s): Arvai, A.S. , Hitomi, K. , Huffman, J.L. , Mol, C.D. , Syed, A. , Tainer, J.A.