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9O01

Crystal structure of afogg1-d140n mutant bound to 8-og dna duplex in an intermediate state

PDB DOI: 10.2210/pdb9o01/pdb

Classification: HYDROLASE, LYASE/DNA
Organism(s): Archaeoglobus Fulgidus , Synthetic Construct

Deposited: 2025-04-01
Deposition Author(s): Arvai, A.S. , Huffman, J.L. , Mol, C.D. , Syed, A. , Tainer, J.A. , Tang, H.Y.H.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.95 Å

9o01
Literature

Crystal structure of afogg1-d140n mutant bound to 8-og dna duplex in an intermediate state

Arvai, A.S. , Huffman, J.L. , Mol, C.D. , Syed, A. , Tainer, J.A. , Tang, H.Y.H.

Primary Citation of Related Structures: 9O01


Proteins
Molecule Chains Sequence Length Organism Sequence
8-oxoguanine DNA glycosylase/AP lyase A 203 Archaeoglobus Fulgidus , Synthetic Construct ISEFGSIEKAISRRIKEFRQLGEKGEVEFDFRPFLDFSVKATIRTELAFCISTANSSATAGLKFQRLLGQGVGVKEALTLAGVRFHNRKAEYIREAFKSFKLVEKALEAESSKAREILLKIKGLGMKEASHFLRNVGREDVAIINRHILRWLERQGYEVPGTMTAKKYLEVEKILMEISEERGESLAEMDLRIWAEMTGKVLK

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
DNA (5'-D(P*GP*CP*GP*TP*CP*CP*AP*(8OG)P*GP*TP*CP*TP*AP*CP*CP*T)-3') b 16 NA GCGTCCAGGTCTACCT
DNA (5'-D(*AP*GP*GP*TP*AP*GP*AP*CP*CP*TP*GP*GP*AP*CP*GP*C)-3') c 16 NA AGGTAGACCTGGACGC
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2025-04-01
Deposition Author(s): Arvai, A.S. , Huffman, J.L. , Mol, C.D. , Syed, A. , Tainer, J.A. , Tang, H.Y.H.