9NZD
Crystal structure of afnth1-k122a mutant bound to tg-dna duplex complex in an intermediate state
PDB DOI: 10.2210/pdb9nzd/pdb
Classification: LYASE/DNA Organism(s): Archaeoglobus Fulgidus , Synthetic Construct
Deposited: 2025-03-31 Deposition Author(s): Arvai, A.S. , Hitomi, K. , Parikh, S. , Syed, A. , Tainer, J.A.
Experimental Data Snapshot
Method: X-RAY DIFFRACTION Resolution: 3.1 Å
Crystal structure of afnth1-k122a mutant bound to tg-dna duplex complex in an intermediate state
Arvai, A.S. , Hitomi, K. , Parikh, S. , Syed, A. , Tainer, J.A.
Primary Citation of Related Structures: 9NZD
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| Endonuclease III | A | 209 | Archaeoglobus Fulgidus , Synthetic Construct | MDPIEVIEVMEREAIKRKAPVYHLKAEIKTPFQHLVAALLSSRTRDEATVRAAQNLFAKVKKPEDLLKLSEEEIAELIKGVGFYRVKAKRLKELAKKLVEDYSSEVPLSFEELVKLPGIGRASANVVLAYSDIPAIPVDTHVHRIANRLGWARTTKPEETEEVLKRLFPLEFWEKVNRAMVGFGQTVCKPQKPLCDECPIKGCPRVGVK |
| Endonuclease III | D | 209 | Archaeoglobus Fulgidus , Synthetic Construct | MDPIEVIEVMEREAIKRKAPVYHLKAEIKTPFQHLVAALLSSRTRDEATVRAAQNLFAKVKKPEDLLKLSEEEIAELIKGVGFYRVKAKRLKELAKKLVEDYSSEVPLSFEELVKLPGIGRASANVVLAYSDIPAIPVDTHVHRIANRLGWARTTKPEETEEVLKRLFPLEFWEKVNRAMVGFGQTVCKPQKPLCDECPIKGCPRVGVK |
| Nucleic Acids / Hybrid | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| DNA (5'-D(*TP*TP*GP*GP*CP*GP*TP*AP*TP*CP*GP*CP*G)-3') | b | 13 | NA | TTGGCGTATCGCG |
| DNA (5'-D(*TP*TP*GP*GP*CP*GP*TP*AP*TP*CP*GP*CP*G)-3') | e | 13 | NA | TTGGCGTATCGCG |
| DNA (5'-D(*AP*CP*GP*CP*GP*AP*(CTG)P*AP*CP*GP*CP*CP*A)-3') | c | 13 | NA | ACGCGATACGCCA |
| DNA (5'-D(*AP*CP*GP*CP*GP*AP*(CTG)P*AP*CP*GP*CP*CP*A)-3') | f | 13 | NA | ACGCGATACGCCA |
Experimental Data
Method: X-RAY DIFFRACTION
Deposited Date: 2025-03-31 Deposition Author(s): Arvai, A.S. , Hitomi, K. , Parikh, S. , Syed, A. , Tainer, J.A.