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FASTA Sequence PDB Format mmCIF Format
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9NQU

Kdm6b-nucleosome structure stabilized by h3k27c-unc8015 covalent conjugate

PDB DOI: 10.2210/pdb9nqu/pdb

Classification: GENE REGULATION/DNA
Organism(s): Homo Sapiens , Mus Musculus , Synthetic Construct

Deposited: 2025-03-13
Deposition Author(s): Lin, C.-C. , Mcginty, R.K.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.16 Å

9nqu
Literature

Kdm6b-nucleosome structure stabilized by h3k27c-unc8015 covalent conjugate

Lin, C.-C. , Mcginty, R.K.

Primary Citation of Related Structures: 9NQU


Proteins
Molecule Chains Sequence Length Organism Sequence
Histone H3.2 A 135 Homo Sapiens , Mus Musculus , Synthetic Construct ARTKQTARKSTGGKAPRKQLATKAARCSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLAAIHAKRVTIMPKDIQLARRIRGERA
Histone H3.2 E 135 Homo Sapiens , Mus Musculus , Synthetic Construct ARTKQTARKSTGGKAPRKQLATKAARCSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLAAIHAKRVTIMPKDIQLARRIRGERA
Histone H4 B 102 Homo Sapiens , Mus Musculus , Synthetic Construct SGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG
Histone H4 F 102 Homo Sapiens , Mus Musculus , Synthetic Construct SGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG
Histone H2A type 1 C 129 Homo Sapiens , Mus Musculus , Synthetic Construct SGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTESHHKAKGK
Histone H2A type 1 G 129 Homo Sapiens , Mus Musculus , Synthetic Construct SGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTESHHKAKGK
Histone H2B type 1-C/E/F/G/I D 125 Homo Sapiens , Mus Musculus , Synthetic Construct PEPAKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Histone H2B type 1-C/E/F/G/I H 125 Homo Sapiens , Mus Musculus , Synthetic Construct PEPAKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Lysine-specific demethylase 6B K 514 Homo Sapiens , Mus Musculus , Synthetic Construct GSDLTISHCAADVMRASKNAKVKGKFRESYLSPAQSVKPKINTEEKLPREKLNPPTPSIYLESKRDAFSPVLLQFCTDPRNPITVIRGLAGSLRLNLGLFSTKTLVEASGEHTVEVRTQVQQPSDENWDLTGTRQIWPCESSRSHTTIAKYAQYQASSFQESLQEERESEDEESEEPDSTTGTSPSSAPDPKNHHIIKFGTNIDLSDAKRWKPQLQELLKLPAFMRVTSTGNMLSHVGHTILGMNTVQLYMKVPGSRTPGHQENNNFCSVNINIGPGDCEWFAVHEHYWETISAFCDRHGVDYLTGSWWPILDDLYASNIPVYRFVQRPGDLVWINAGTVHWVQATGWCNNIAWNVGPLTAYQYQLALERYEWNEVKNVKSIVPMIHVSWNVARTVKISDPDLFKMIKFCLLQSMKHCQVQRESLVRAGKKIAYQGRVKDEPAYYCNECDVEVFNILFVTSENGSRNTYLVHCEGCARRRSAGLQGVVVLEQYRTEELAQAYDAFTLAPASTSR

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
DNA (185-MER) i 185 NA ATCCCTATACGCGGCCGCCCTGGAGAATCCCGGTGCCGAGGCCGCTCAATTGGTCGTAGACAGCTCTAGCACCGCTTAAACGCACGTACGCGCTGTCCCCCGCGTTTTAACCGCCAAGGGGATTACTCCCTAGTCTCCAGGCACGTGTCAGATATATACATCCTGTGCATGTATTGAACAGCGAT
DNA (185-MER) j 185 NA ATCGCTGTTCAATACATGCACAGGATGTATATATCTGACACGTGCCTGGAGACTAGGGAGTAATCCCCTTGGCGGTTAAAACGCGGGGGACAGCGCGTACGTGCGTTTAAGCGGTGCTAGAGCTGTCTACGACCAATTGAGCGGCCTCGGCACCGGGATTCTCCAGGGCGGCCGCGTATAGGGAT
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2025-03-13
Deposition Author(s): Lin, C.-C. , Mcginty, R.K.