PDBi (Protein Data Bank in India)

All in One Protein Databank
Home About Help Resources External Links Contact Us
Advanced Search
FASTA Sequence PDB Format mmCIF Format
FASTA Sequence PDB Format PDB Format(gz) PDBx/mmCIF Format PDBx/mmCIF Format(gz) PDBML/XML Format Validation Full PDF Validation CIF

9NPX

Sars-cov-2 nsp1 bound to the rhinolophus lepidus 40s ribosomal subunit (local refinement of the 40s body)

PDB DOI: 10.2210/pdb9npx/pdb

Classification: RIBOSOME
Organism(s): Homo Sapiens , Rhinolophus Lepidus , Severe Acute Respiratory Syndrome Coronavirus 2

Deposited: 2025-03-11
Deposition Author(s): Gen, R. , Seattle Structural Genomics Center For Infectious Disease (Ssgcid) , Veesler, D.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.1 Å

9npx
Literature

Sars-cov-2 nsp1 bound to the rhinolophus lepidus 40s ribosomal subunit (local refinement of the 40s body)

Gen, R. , Seattle Structural Genomics Center For Infectious Disease (Ssgcid) , Veesler, D.

Primary Citation of Related Structures: 9NPX


Proteins
Molecule Chains Sequence Length Organism Sequence
40S ribosomal protein S27 A 84 Homo Sapiens , Rhinolophus Lepidus , Severe Acute Respiratory Syndrome Coronavirus 2 MPLAKDLLHPSPEEEKRKHKKKRLVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCSTVLCQPTGGKARLTEGCSFRRKQH
40S ribosomal protein S21 V 84 Homo Sapiens , Rhinolophus Lepidus , Severe Acute Respiratory Syndrome Coronavirus 2 XMQNDAGEFVDLYVPRKCSASNRIIGAKDHASIQMNVAEVDKVTGRFNGQFKTYAICGAIRRMGESDDSILRLAKADGIVSKNF
40S ribosomal protein S23 W 143 Homo Sapiens , Rhinolophus Lepidus , Severe Acute Respiratory Syndrome Coronavirus 2 MGKCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKKERPRS
40S ribosomal protein S24 X 130 Homo Sapiens , Rhinolophus Lepidus , Severe Acute Respiratory Syndrome Coronavirus 2 MNDTVTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTTPDVIFVFGFRTHFGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKKVRGTAKATVGAGKK
40S ribosomal protein S26 Z 115 Homo Sapiens , Rhinolophus Lepidus , Severe Acute Respiratory Syndrome Coronavirus 2 MTKKRRNNGRAKKGRGHVQPIRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDISEASVFDAYVLPKLYVKLHYCVSCAIHSKVVRNRSREARKDRTPPPRFRPAGAAPRPPPKPM
40S ribosomal protein S6 F 249 Homo Sapiens , Rhinolophus Lepidus , Severe Acute Respiratory Syndrome Coronavirus 2 MKLNISFPATGCQKLIEVDDERKLRTFYEKRMATEVAADALGEEWKGYVVRISGGNDKQGFPMKQGVLTHGRVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDANLSVLNLVIVKKGEKDIPGLTDTTVPRRLGPKRASRIRKLFNLSKEDDVRQYVVRKPLNKEGKKPRTKAPKIQRLVTPRVLQHKRRRIALKKQRTKKNKEEAAEYAKLLAKRMKEAKEKRQEQIAKRRRLSSLRASTSKSESSQK
40S ribosomal protein S8 H 208 Homo Sapiens , Rhinolophus Lepidus , Severe Acute Respiratory Syndrome Coronavirus 2 MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRLDVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLVDSTPYRQWYESHYALPLGRKKGAKLTPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIASRPGQCGRADGYVLEGKELEFYLRKIKARKGK
Host translation inhibitor nsp1 J 180 Homo Sapiens , Rhinolophus Lepidus , Severe Acute Respiratory Syndrome Coronavirus 2 MESLVPGFNEKTHVQLSLPVLQVRDVLVRGFGDSVEEVLSEARQHLKDGTCGLVEVEKGVLPQLEQPYVFIKRSDARTAPHGHVMVELVAELEGIQYGRSGETLGVLVPHVGEIPVAYRKVLLRKNGNKGAGGHSYGADLKSFDLGDELGTDPYEDFQENWNTKHSSGVTRELMRELNGG
40S ribosomal protein S11 K 158 Homo Sapiens , Rhinolophus Lepidus , Severe Acute Respiratory Syndrome Coronavirus 2 MADIQTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKCPFTGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDVQIGDIVTVGECRPLSKTVRFNVLKVTKAAGTKKQFQKF
40S ribosomal protein S7 G 194 Homo Sapiens , Rhinolophus Lepidus , Severe Acute Respiratory Syndrome Coronavirus 2 MFSSSAKIVKPNGEKPDEFESGISQALLELEMNSDLKAQLRELNITAAKEIEVGGGRKAIIIFVPVPQLKSFQKIQVRLVRELEKKFSGKHVVFIAQRRILPKPTRKSRTKNKQKRPRSRTLTAVHDAILEDLVFPSEIVGKRIRVKLDGSRLIKVHLDKAQQNNVEHKVETFSGVYKKLTGKDVNFEFPEFQL
40S ribosomal protein S4, X isoform D 263 Homo Sapiens , Rhinolophus Lepidus , Severe Acute Respiratory Syndrome Coronavirus 2 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDVTYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKRLAAKQSSG
40S ribosomal protein S30 E 61 Homo Sapiens , Rhinolophus Lepidus , Severe Acute Respiratory Syndrome Coronavirus 2 MGKVHGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFVNVVPTFGKKKGPNANS
40S ribosomal protein S3a C 264 Homo Sapiens , Rhinolophus Lepidus , Severe Acute Respiratory Syndrome Coronavirus 2 MAVGKNKRLTKGGKKGAKKKVVDPFSKKDWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVSLADLQNDEVAFRKFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEGSSSGKATGDETGAKVERADGYEPPVQESV
40S ribosomal protein S9 I 194 Homo Sapiens , Rhinolophus Lepidus , Severe Acute Respiratory Syndrome Coronavirus 2 MPVARSWVCRKTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEKDPRRLFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHIRVRKQVVNIPSFIVRLDSQKHIDFSLRSPYGGGRPGRVKRKNAKKGQGGAGAGDDEEED
40S ribosomal protein uS3, RPS3 B 243 Homo Sapiens , Rhinolophus Lepidus , Severe Acute Respiratory Syndrome Coronavirus 2 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLGEKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQGVLGIKVKIMLPWDPSGKIGPKKPLPDHVSIVEPKDEILPTTPISEQKGGKPEPPAMPQPVPTA
40S ribosomal protein S13 M 151 Homo Sapiens , Rhinolophus Lepidus , Severe Acute Respiratory Syndrome Coronavirus 2 MGRMHAPGKGLSQSALPYRRSVPTWLKLTSDDVKEQIYKLAKKGLTPSQIGVILRDSHGVAQVRFVTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIESRIHRLARYYKTKRVLPPNWKYESSTASALVA
40S ribosomal protein S14 N 151 Homo Sapiens , Rhinolophus Lepidus , Severe Acute Respiratory Syndrome Coronavirus 2 MAPRKGKEKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKETICRVTGGMKVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNRTKTPGPGAQSALRALARSGMKIGRIEDVTPIPSDSTRRKGGRRGRRL
40S ribosomal protein S15a P 130 Homo Sapiens , Rhinolophus Lepidus , Severe Acute Respiratory Syndrome Coronavirus 2 MVRMNVLADALKSINNAEKRGKRQVLIRPCSKVIVRFLTVMMKHGYIGEFEIIDDHRAGKIVVNLTGRLNKCGVISPRFDVQLKDLEKWQNNLLPSRQFGFIVLTTSAGIMDHEEARRKHTGGKILGFFF
40S ribosomal protein S17 R 135 Homo Sapiens , Rhinolophus Lepidus , Severe Acute Respiratory Syndrome Coronavirus 2 MGRVRTKTVKKAARVIIEKYYTRLGNDFHTNKRVCEEIAIIPSKKLRNKIAGYVTHLMKRIQRGPVRGISIKLQEEERERRDNYVPEVSALDQEIIEVDPDTKEMLKLLDFGSLSNLQVTQPTVGMNFKTPRGAV
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2025-03-11
Deposition Author(s): Gen, R. , Seattle Structural Genomics Center For Infectious Disease (Ssgcid) , Veesler, D.