PDBi (Protein Data Bank in India)

All in One Protein Databank
Home About Help Resources External Links Contact Us
Advanced Search
FASTA Sequence PDB Format mmCIF Format
FASTA Sequence PDB Format PDB Format(gz) PDBx/mmCIF Format PDBx/mmCIF Format(gz) PDBML/XML Format Validation Full PDF Validation CIF

9NPU

Pre-catalytic ternary complex of dna polymerase lambda with bound 1-nt gapped ssb substrate containing template ribonucleotide opposite primer terminus, and incoming dumpnpp

PDB DOI: 10.2210/pdb9npu/pdb

Classification: TRANSFERASE
Organism(s): Homo Sapiens , Synthetic Construct

Deposited: 2025-03-11
Deposition Author(s): Kaminski, A.M. , Kunkel, T.A. , Luthman, A.J. , Pedersen, L.C. , Ramsden, D.A.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.63 Å

9npu
Literature

Pre-catalytic ternary complex of dna polymerase lambda with bound 1-nt gapped ssb substrate containing template ribonucleotide opposite primer terminus, and incoming dumpnpp

Kaminski, A.M. , Kunkel, T.A. , Luthman, A.J. , Pedersen, L.C. , Ramsden, D.A.

Primary Citation of Related Structures: 9NPU


Proteins
Molecule Chains Sequence Length Organism Sequence
DNA polymerase lambda A 346 Homo Sapiens , Synthetic Construct GSAAAVLDKWVCAQPSSQKATNHNLHITEKLEVLAKAYSVQGDKWRALGYAKAINALKSFHKPVTSYQEACSIPGIGKRMAEKIIEILESGHLRKLDHISESVPVLELFSNIWGAGTKTAQMWYQQGFRSLEDIRSQASLTTQQAIGLKHYSDFLERMPREEATEIEQTVQKAAQAFNSGLLCVACGSYRRGKATCGDVDVLITHPDGRSHRGIFSRLLDSLRQEGFLTDDLVSQEENGQQQKYLGVCRLPGPGRRHRRLDIIVVPYSEFACALLYFTGSAHFNRSMRALAKTKGMSLSEHALSTAVVRNTHGCKVGPGRVLPTPTEKDVFRLLGLPYREPAERDW

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
DNA/RNA (5'-D(*CP*GP*GP*CP*A)-R(P*G)-D(P*TP*AP*CP*TP*G)-3') t 11 NA CGGCAGTACTG
DNA (5'-D(*CP*AP*GP*TP*AP*C)-3') p 6 NA CAGTAC
DNA (5'-D(P*GP*CP*CP*G)-3') d 4 NA GCCG
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2025-03-11
Deposition Author(s): Kaminski, A.M. , Kunkel, T.A. , Luthman, A.J. , Pedersen, L.C. , Ramsden, D.A.