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FASTA Sequence PDB Format mmCIF Format
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9NL4

Structure of r2 retrotransposon protein from platysternon megacephalum after second strand nicking

PDB DOI: 10.2210/pdb9nl4/pdb

Classification: RNA BINDING PROTEIN/RNA/DNA
Organism(s): Platysternon Megacephalum , Synthetic Construct

Deposited: 2025-03-02
Deposition Author(s): Collins, K. , Nogales, E. , Thawani, A.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 4.6 Å

9nl4
Literature

Structure of r2 retrotransposon protein from platysternon megacephalum after second strand nicking

Collins, K. , Nogales, E. , Thawani, A.

Primary Citation of Related Structures: 9NL4


Proteins
Molecule Chains Sequence Length Organism Sequence
R2 retrotransposon protein A 1121 Platysternon Megacephalum , Synthetic Construct QKTIIQLPNDNPACPFCGDHVGKPSALNVHLKRNHGGREVEFQCSMCNKADPKAHSILCHIPKCKGKVTEEPTGDWACETCNKQFNTKSGLSQHKRIAHPAIRNQERIAASQPKPNSQRGKHNSCWTVEEEQLLAAFNNMFWGKKNINILISDHIHMKTAKQISEKRRLLGLNKNATVTTTNPLPVSSTCHLKIRTDSPNTTTGLKDTYMCKINENIVNQGQIKFDSEVISAWMAGDSNIRSLVESTSLDILSTFLMETPKPRKKGNNKITNKKSGKKKKWMEKRAVKKGFYKRYQHLFETDRCKLASIILDGTERLQCQIPLTEILETYKSKWETLTPFEGLGQFKSHAVADNTAFEILLSAKEIMKNIKEMNKNSAPGPDKVSLRDLLLADPECNALEKLFNTWLITGIIPNSIKECRSLLIPKTADPEALKELGNWRPLTIGSIVLRLFSRIITNRLAKACPINARQRGFIATPGCSENLKILHTIVKQAKTSKKSLGVVFVDIAKAFDSVSHDHIMWVLQERGLDQHIVNIIEDSYKKIHTRMEVGTERTPPIEIKVGVKQGDPMSPLLFNLAIDPLITALEKANTGFSYGKNKITSLAFADDLVMLSDTWEGMNKNIQILETFCNLSGLKVQAKKCYGFFLSPTHDSYTINKCDAWKIDKDSLNMIQPGESEKYLGLKVDPWIGFSKPVLAEKLTIWLKRLTEAPLKPSQKLTMLNIYTIPRIIYLADHTDTKKTLLSSLDDNIRTVVKGWLHLPPDTCNGFIYTKTRDGGLGVTRLASLIPSIQARRLHRIATSEDETIRNIAMANNIEEEFQNLWVTAGGKKEEIPRITDPVSIDYRLPRRILELLNEWEKPAPKKMYPIPCNWREAEMAHWKNLPCQGSGIEHFDNDTISNDWLQFHRGFSERQFLMGLKIRANVYPTREYQGRGRTNKNVNCRNCTASYESLSHILGQCPAVQGARIRRHNKLCSMLKREAKELKWVVYEEPHLHTTEKELRKPDLIFVKEEMALVVDVTVRFEYKEKVFEDAAAEKVRHYKDLTSQIKELTGAKEIEYFGFPLGARGKWPEINEKVLTALGMPDYQQKRTAKRFSKRTLLYSIDVINTFENIGKNNKNNVP

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
Bottom strand of target rDNA b 70 NA TTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTCACAG
complementary DNA p 74 NA GGCTATTTTCCGAACACATATAATTAATATATGTTCCTTTTCCGGGTTAAGTAAAGGTGGCCCGTCCACCTTGC
3'UTR RNA r 74 NA GCAAGGUGGACGGGCCACCUUUACUUAACCCGGAAAAGGAACAUAUAUUAAUUAUAUGUGUUCGGAAAAUAGCC
Top strand for target rDNA t 70 NA CTGTGAAGCGCGGGTAAACGGCGGGAGTAACTATGACTCTCTTAAGGTAGCCAAATGCCTCGTCATCTAA
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2025-03-02
Deposition Author(s): Collins, K. , Nogales, E. , Thawani, A.